Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_D08
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 42 2e-04
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 33 0.071
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 31 0.22
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 30 0.38
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 30 0.50
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 30 0.50
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 29 0.66
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 29 0.66
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 29 0.87
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 28 1.5
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 28 2.0
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 3.5
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm... 27 3.5
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 27 4.6
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 26 6.1
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 6.1
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 26 6.1
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 26 6.1
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 26 6.1
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S... 26 8.1
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 8.1
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 8.1
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 26 8.1
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 26 8.1
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 41.5 bits (93), Expect = 2e-04
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +1
Query: 460 PSNENLTEEEKEAKMKKFIXENEKFLK-QFGLLRKYEDSTKFLLDH-NQLVCEETANYLV 633
P NEN +E+E+ + + + +KF FG Y S +FL +H N L EE ++ ++
Sbjct: 232 PVNENESEDEEGLSLSE---DGKKFANIDFG---DYSSSEEFLKEHLNILADEEESDAIL 285
Query: 634 IWCINLEMEEKHDLXAHVAHQTICMQYILEL 726
+ N E+E K L HQ + + Y +L
Sbjct: 286 LEAFNAELEGKPSLAKQYVHQALLISYCRQL 316
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 66 DYSKWKDI*NFLTMKTRPSPNIDTPSLFRWR 158
DYSKW + PN+D S RWR
Sbjct: 4 DYSKWDKLELSDDSDIEVHPNVDKKSFIRWR 34
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 32.7 bits (71), Expect = 0.071
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +1
Query: 292 NLNSLKKMLAELENDEKKILKRDEELRKKDKHTPWNVDTISEPGFNKTVINTKALRPSNE 471
N+ +LK + EL+ + +KR E + P V PG KT++ S
Sbjct: 493 NIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAVANESKA 552
Query: 472 NLTEEEKEAKMKKFIXENEKFLKQ 543
N + K++ E+E+ ++Q
Sbjct: 553 NFISIRGPELLNKYVGESERAVRQ 576
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 31.1 bits (67), Expect = 0.22
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +1
Query: 304 LKKMLAELENDEKKILKRDEELRKKDKHTPWNVDTISEPGFNKTVINTKALRPSNENLTE 483
LKK L +L + + IL + EELR K + S N +A R S N E
Sbjct: 252 LKKDLKDLVEEFQPILDKGEELRSDLKLKDDTFNDYSSASMELNTSNLRA-RASFSNFME 310
Query: 484 EEKEAKMKKFIXENEKFLKQFGL-LRKYEDSTKFLLD 591
EK K+ + + N L+ L L + + S K L +
Sbjct: 311 NEK--KLYEKVNTNRTLLRNANLTLNEAQQSVKSLTE 345
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 30.3 bits (65), Expect = 0.38
Identities = 25/96 (26%), Positives = 46/96 (47%)
Frame = +1
Query: 256 GKKISEADADSPNLNSLKKMLAELENDEKKILKRDEELRKKDKHTPWNVDTISEPGFNKT 435
GK+ + + PN+ +L+KML E+K + +EE R +++ I+E K
Sbjct: 234 GKQAAGSKRKGPNVTALQKML------EEKRAREEEEQRIREEEA-----RIAEE--EKR 280
Query: 436 VINTKALRPSNENLTEEEKEAKMKKFIXENEKFLKQ 543
+ + R L ++EKE K K+ + K+L +
Sbjct: 281 LAEVEEARKEEARLKKKEKERKKKEEMKAQGKYLSK 316
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 29.9 bits (64), Expect = 0.50
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = -1
Query: 719 NMYCMQIV*WATWAXRSCFSSISKLIHQMTR*LAVSSQTNWLWSSKNLVESSYLRSNP 546
+++C+ I+ W + S+S L QM L +SS LWSSK L+ Y R NP
Sbjct: 288 SVFCLYILEWFLALIFNKPPSLSVLELQMP--LPISSA---LWSSKELLSKDYWRPNP 340
>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 477
Score = 29.9 bits (64), Expect = 0.50
Identities = 19/80 (23%), Positives = 38/80 (47%)
Frame = +1
Query: 325 LENDEKKILKRDEELRKKDKHTPWNVDTISEPGFNKTVINTKALRPSNENLTEEEKEAKM 504
+ N+ + ++R E + K NVD ++ K + ++L +N +L + KEA M
Sbjct: 34 ITNELRNAIQRQRE-GSQSKPQGANVDRVNSTNLEKDIDLQESLLTNNPDLLQTFKEAVM 92
Query: 505 KKFIXENEKFLKQFGLLRKY 564
K + + + + LLR +
Sbjct: 93 KGHLSNEQFWSTRLHLLRAH 112
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.66
Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 1/104 (0%)
Frame = +1
Query: 277 DADSPNLNSLKKMLAELENDEKKILKRDEELRKKDKHTPWNVDTISEPGFNKTVINTKAL 456
D + L + + EL + LK E + P V PG KT++
Sbjct: 128 DISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVA 187
Query: 457 RPSNENLTEEEKEAKMKKFIXENEKFLKQ-FGLLRKYEDSTKFL 585
N + A + K+I E+ + +++ FG +++E F+
Sbjct: 188 ASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFM 231
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 29.5 bits (63), Expect = 0.66
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Frame = +1
Query: 322 ELENDEKKILKRDEELRKKDKHTPWNVDTISEPGFNKTVINTKALRPSNENLTEEEK-EA 498
E+ E+ +L EELRK++++ D +++P I +K LR E K +
Sbjct: 85 EISQLEQDLLVAQEELRKREQY-----DELAKP------IMSKGLRSRTEQQESIGKLQD 133
Query: 499 KMKKFIXENEKFLKQFGLLRKYEDSTKFLLDHNQLVCEETAN 624
+++ EN ++K + L + D T ++H Q + +N
Sbjct: 134 AIRELEEENANYVKAWNLRKDIFDETLKQMNHLQSILHPPSN 175
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 29.1 bits (62), Expect = 0.87
Identities = 22/80 (27%), Positives = 34/80 (42%)
Frame = +1
Query: 256 GKKISEADADSPNLNSLKKMLAELENDEKKILKRDEELRKKDKHTPWNVDTISEPGFNKT 435
GK SEAD + NS K + N E + K+ E + + PW D S+P N +
Sbjct: 67 GKITSEADTEK--YNSSKSPV----NKEGSVEKKSSE-KSSTNNKPWRGDNTSKPSANSS 119
Query: 436 VINTKALRPSNENLTEEEKE 495
T + E ++ K+
Sbjct: 120 AERTSSQHQKPETSSQIGKD 139
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 28.3 bits (60), Expect = 1.5
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = +1
Query: 265 ISEADADSPNLNSLKKMLAELENDEKKILKRDEELRKKDKHTPWNVDTIS-EPGFNKTVI 441
+SE DS N + E NDE K+L RD E ++ +K + N + S + + +
Sbjct: 1 MSENSTDSKNFQ-FSEGSRESSNDELKVLLRDTETKEDEKSSFSNSEEESIIENLSDSSV 59
Query: 442 NTKALRPSNENLTEEEKEAKMKKFIXENEKFLKQFGL 552
N K ++ L++ E+K + ++++ + F L
Sbjct: 60 N-KEYAKNSLKLSDAVSESKYLNPLLKDKRHDRSFAL 95
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 283 DSPNLNSLKKMLAELENDEKKILKRDEELRKKDKHTPWNVDTISEPGFNKTVI-NTKALR 459
DS L + +ELE+ +K +LK+ E L+KK + TI F+K + N+ LR
Sbjct: 353 DSQFAAGLSLLASELES-QKNLLKKFENLKKKSSKDFLSPSTILSNAFSKVSLPNSLILR 411
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 27.1 bits (57), Expect = 3.5
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 2/125 (1%)
Frame = +1
Query: 295 LNSLKKMLAELENDEKKILKRDEELRKKDKHTPWNVDTISEPGFNKTVINTKALRPSNEN 474
+ L ++ LE + K+L+ DEE++ DT+ + + K L+ + N
Sbjct: 451 MEELNELKNNLEVESSKVLRLDEEMKCLKDEQLSQFDTVFSLTDERDGLQ-KDLKNTKGN 509
Query: 475 LTEE-EKEAKMKKFIXENEKFLKQFGLLRKYEDSTKFLLD-HNQLVCEETANYLVIWCIN 648
L +E + A +K I + E + K DS + L +N L CE + + +N
Sbjct: 510 LDDEIGRSAFLKSQIRDQEL------TIEKLHDSLETLSQTNNSLQCEISEKNAELNSVN 563
Query: 649 LEMEE 663
++ E
Sbjct: 564 SKLSE 568
>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 27.1 bits (57), Expect = 3.5
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +1
Query: 322 ELENDEKKILKRDEELRKKDKHTPWNVDTISEPGFNKTVINTKALRPSNENLTEEEKEAK 501
EL+N+ +LK+D+EL + + + +I + KTV K + + E L + + K
Sbjct: 56 ELQNEISSLLKQDKELDLQIQDCMREMTSIYDTHLPKTVSGRKRQKVNAETLLDYGR--K 113
Query: 502 MKKF 513
+ KF
Sbjct: 114 LSKF 117
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 271 EADADSPNLNSLKKMLAELENDEKKILKRDEELRKK 378
E AD+P L K + ++ +N + + K+DE+LRK+
Sbjct: 326 EEVADAPTLEK-KSLQSDSKNKKSQKRKKDEDLRKE 360
>SPBC8D2.19 |mde3||serine/threonine protein kinase
Mde3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 559
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +1
Query: 118 PVQTLIPHHCFDGGTR--PVWNAWKSDAARKRNWSKE 222
P+Q L+P +C +G + P AW D + KE
Sbjct: 284 PIQKLLPQNCPEGHAKMIPCLLAWNPDVRPTAKYCKE 320
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 262 KISEADADSPNLNSLK--KMLAELENDEKKILKRDEELRKK 378
K+S+ S S K K LE EKK+ +++EEL KK
Sbjct: 4 KLSKKKLKSLEYRSKKFDKKSQSLEEHEKKVQQKNEELEKK 44
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 427 NKTVINTKAL--RPSNENLTEEEKEAKMKK 510
+KT + K L RPSN+ LT+E K K K
Sbjct: 595 SKTSSHNKQLKRRPSNDTLTQEAKSKKQAK 624
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 295 LNSLKKMLAELENDEKKILKRDEELRKKDKHT 390
+N KK ++N+ + + +RD E+RK + T
Sbjct: 257 VNIAKKQYTNVQNEYELMFERDTEIRKAEDQT 288
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = +1
Query: 448 KALRPSNENLTEEEKEAK-----MKKFIXENEKFLKQFGLLRKYEDSTKFLLDHNQLVCE 612
+A SN L EK AK +++F + +KF K FG L+ Y + QL+ +
Sbjct: 283 RATEFSNSMLISIEKWAKYCDVDLQEFEKKLQKFWKNFGTLKLYSNIESLPASLKQLIKD 342
Query: 613 E 615
E
Sbjct: 343 E 343
>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
S28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 288
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 295 LNSLKKMLAELENDEKKILKRDEELRKKDKHTPWNVDTISEP 420
L LKK A K+ LKR EELRK+ N+DT+++P
Sbjct: 37 LQGLKKQKANQRR--KQNLKRREELRKQ------NLDTLADP 70
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 289 PNLNSLKKMLAELENDEKKILKRDEE 366
PNL+ + L +LEND + +L RD E
Sbjct: 17 PNLDDREYRLIKLENDLEVLLVRDPE 42
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 693 SDYLHAVHIGTVQTXGCGSKSLCWLFL 773
S +LH ++ GT+ C +K+LC L +
Sbjct: 513 SAFLHYIYCGTLNGSYCTAKNLCNLLI 539
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 406 TISEPGFNKTVINTKALRPSNENLTE 483
T+ P NKT+++ PSN+ LTE
Sbjct: 101 TVETPLANKTIVSPLPESPSNDALTE 126
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 8.1
Identities = 19/80 (23%), Positives = 34/80 (42%)
Frame = +1
Query: 184 KSDAARKRNWSKERKKTNDV*PRPGKKISEADADSPNLNSLKKMLAELENDEKKILKRDE 363
KS +K + +K+ K++ + P + + D + L+KML D+ K D+
Sbjct: 80 KSSTKKKSSQNKQAKESKLLDPIAFQHKIALEEDDREIAHLEKMLGIKSKDKSAHSKIDK 139
Query: 364 ELRKKDKHTPWNVDTISEPG 423
E + +D I PG
Sbjct: 140 EFGWLLEDLDQEIDDIGVPG 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,978
Number of Sequences: 5004
Number of extensions: 61870
Number of successful extensions: 248
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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