Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_D08
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.5  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -2

Query: 685 HGPXDHVSPPFLN*YTR*QGNWQ--FLHRLTGYGPAKI*WSP 566
           H P DH+  P +  Y    GN++   + + T Y    + W P
Sbjct: 104 HVPSDHIWRPDIVLYNNADGNYEVTLMTKATVYYSGLVVWQP 145


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 93   NFLTMKTRPSPNIDTP 140
            N LTMK RP P  + P
Sbjct: 1380 NSLTMKVRPHPTDNAP 1395


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 430 KTVINTKALRPSNENLTEEEKEAKMKKFIXENE 528
           +TV    AL PS+   TEEEK+ K K+ +  +E
Sbjct: 521 ETVGLLNALPPSSMKETEEEKK-KTKQSLSPSE 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,268
Number of Sequences: 438
Number of extensions: 4234
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)