Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_D06
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...   100   3e-22
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   6.6  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score =  100 bits (239), Expect = 3e-22
 Identities = 47/91 (51%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
 Frame = +3

Query: 138 NATKYTRYHST--KSPRKGTLPXXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECA 311
           N  K+T +  T  K      L   +RRYDRKQ G+GGQ+KP+F         +VLRLEC 
Sbjct: 16  NCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAKVTKKVVLRLECV 75

Query: 312 DCKVRSQVALKRCKHFELGGDKKRKGQMIQF 404
            CK ++Q+ LKRCKHFELGG+KK KG  IQF
Sbjct: 76  SCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 195 AACLSLDFLYCDTLCTLWHL 136
           A  + L +LY DTL + WHL
Sbjct: 681 AVAILLHYLYTDTLLSPWHL 700


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,322
Number of Sequences: 5004
Number of extensions: 32699
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)