Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_D06
(927 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0648 + 20257442-20257528,20257688-20257867,20258055-202581... 91 1e-18
07_03_0646 + 20250684-20250686,20251522-20251701,20251899-202519... 91 1e-18
07_03_0643 + 20239224-20239310,20239470-20239649,20239837-202399... 91 1e-18
07_03_0641 + 20214245-20214247,20215086-20215265,20215463-202155... 91 1e-18
07_03_0640 + 20207497-20207554,20208457-20208482,20208522-202087... 91 1e-18
07_03_0639 + 20203902-20203988,20204152-20204331,20204529-202046... 91 1e-18
07_03_0226 + 15395380-15395382,15396993-15397172,15397286-153973... 91 1e-18
07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561 53 3e-07
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426... 29 6.9
01_07_0075 + 40908875-40909069,40909147-40909215,40909363-409094... 29 6.9
>07_03_0648 +
20257442-20257528,20257688-20257867,20258055-20258129,
20258230-20258289
Length = 133
Score = 91.1 bits (216), Expect = 1e-18
Identities = 44/89 (49%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Frame = +3
Query: 129 KNVNATKYTRYHST--KSPRKGTLPXXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRL 302
KN K+T + T K + +RRYDRKQ GYGGQ+KP+F IVL+L
Sbjct: 41 KNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKL 100
Query: 303 ECADCKVRSQVALKRCKHFELGGDKKRKG 389
+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 101 QCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
>07_03_0646 +
20250684-20250686,20251522-20251701,20251899-20251973,
20252072-20252131
Length = 105
Score = 91.1 bits (216), Expect = 1e-18
Identities = 44/89 (49%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Frame = +3
Query: 129 KNVNATKYTRYHST--KSPRKGTLPXXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRL 302
KN K+T + T K + +RRYDRKQ GYGGQ+KP+F IVL+L
Sbjct: 13 KNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKL 72
Query: 303 ECADCKVRSQVALKRCKHFELGGDKKRKG 389
+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 73 QCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
>07_03_0643 +
20239224-20239310,20239470-20239649,20239837-20239911,
20240012-20240071
Length = 133
Score = 91.1 bits (216), Expect = 1e-18
Identities = 44/89 (49%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Frame = +3
Query: 129 KNVNATKYTRYHST--KSPRKGTLPXXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRL 302
KN K+T + T K + +RRYDRKQ GYGGQ+KP+F IVL+L
Sbjct: 41 KNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKL 100
Query: 303 ECADCKVRSQVALKRCKHFELGGDKKRKG 389
+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 101 QCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
>07_03_0641 +
20214245-20214247,20215086-20215265,20215463-20215537,
20215636-20215695
Length = 105
Score = 91.1 bits (216), Expect = 1e-18
Identities = 44/89 (49%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Frame = +3
Query: 129 KNVNATKYTRYHST--KSPRKGTLPXXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRL 302
KN K+T + T K + +RRYDRKQ GYGGQ+KP+F IVL+L
Sbjct: 13 KNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKL 72
Query: 303 ECADCKVRSQVALKRCKHFELGGDKKRKG 389
+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 73 QCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
>07_03_0640 +
20207497-20207554,20208457-20208482,20208522-20208701,
20208891-20208965,20209062-20209121
Length = 132
Score = 91.1 bits (216), Expect = 1e-18
Identities = 44/89 (49%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Frame = +3
Query: 129 KNVNATKYTRYHST--KSPRKGTLPXXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRL 302
KN K+T + T K + +RRYDRKQ GYGGQ+KP+F IVL+L
Sbjct: 40 KNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKL 99
Query: 303 ECADCKVRSQVALKRCKHFELGGDKKRKG 389
+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 100 QCQSCKHYSQHPIKRCKHFEIGGDKKGKG 128
>07_03_0639 +
20203902-20203988,20204152-20204331,20204529-20204603,
20204696-20204755
Length = 133
Score = 91.1 bits (216), Expect = 1e-18
Identities = 44/89 (49%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Frame = +3
Query: 129 KNVNATKYTRYHST--KSPRKGTLPXXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRL 302
KN K+T + T K + +RRYDRKQ GYGGQ+KP+F IVL+L
Sbjct: 41 KNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKL 100
Query: 303 ECADCKVRSQVALKRCKHFELGGDKKRKG 389
+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 101 QCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
>07_03_0226 +
15395380-15395382,15396993-15397172,15397286-15397360,
15397466-15397525
Length = 105
Score = 91.1 bits (216), Expect = 1e-18
Identities = 44/89 (49%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Frame = +3
Query: 129 KNVNATKYTRYHST--KSPRKGTLPXXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRL 302
KN K+T + T K + +RRYDRKQ GYGGQ+KP+F IVL+L
Sbjct: 13 KNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKL 72
Query: 303 ECADCKVRSQVALKRCKHFELGGDKKRKG 389
+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 73 QCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
>07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561
Length = 62
Score = 53.2 bits (122), Expect = 3e-07
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +3
Query: 288 IVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 389
IVL+L+C CK SQ +KRCKHF++GGDKK KG
Sbjct: 25 IVLKLQCQSCKHYSQHPIKRCKHFKIGGDKKGKG 58
>03_04_0161 +
17838466-17838551,17842379-17842445,17842537-17842662,
17842756-17842886,17843121-17843220,17843334-17843466,
17843500-17843544,17843545-17843608,17843692-17844469,
17844897-17845229,17845427-17845634,17845733-17845809,
17846168-17846240,17846343-17846413,17846597-17846716,
17846815-17846879,17846974-17847124
Length = 875
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 207 RRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRCK 353
+ + + QG GG S +F ++LE ADC + +V RCK
Sbjct: 207 KELEGRLQGIGGFSNCLFTFLFAGVSMDEVKLEQADCDMDERVYCDRCK 255
>01_07_0075 +
40908875-40909069,40909147-40909215,40909363-40909461,
40909999-40910078,40910162-40910444,40910557-40910580,
40911039-40911700,40912037-40912121,40912203-40912254,
40912336-40912385,40912450-40912497,40912590-40912766
Length = 607
Score = 28.7 bits (61), Expect = 6.9
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = -1
Query: 231 PAVYDHNVFXXWAACLSLDFLYCDTLCT------LWHLHFLQYVL 115
P + D+N F AA LD T+CT LW +FLQY L
Sbjct: 45 PKLNDNNAFRVLAAASFLDLQDLCTICTDFIISELWTSNFLQYQL 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,969,690
Number of Sequences: 37544
Number of extensions: 277617
Number of successful extensions: 652
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -