Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_D06
         (927 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    27   0.32 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    27   0.32 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.9  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
            isoform B protein.
          Length = 931

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +1

Query: 115  QDVLQKM*MPQSTQGITVQKVQGKA---RCPXXEDVMIVNSRVTVVSPNPSSKRRQKPLR 285
            + + QK    +S Q ++  K+Q  +   R P        N R TVVSP P+ +R  K ++
Sbjct: 857  ESIQQKAKRSKSLQEVSSDKLQESSTDSRNPALALAEPYNQRGTVVSPPPTKRRTMKVVK 916


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +1

Query: 115  QDVLQKM*MPQSTQGITVQKVQGKA---RCPXXEDVMIVNSRVTVVSPNPSSKRRQKPLR 285
            + + QK    +S Q ++  K+Q  +   R P        N R TVVSP P+ +R  K ++
Sbjct: 895  ESIQQKAKRSKSLQEVSSDKLQESSTDSRNPALALAEPYNQRGTVVSPPPTKRRTMKVVK 954


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 30  GILKILSFLTFV*YRAERTQKW*TYQNSAGRTAKNV 137
           G+LK+L  LTF+ + +  TQ    Y+        N+
Sbjct: 4   GVLKLLVLLTFLLHPSRCTQGKVNYREKEKEVLDNI 39


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 30  GILKILSFLTFV*YRAERTQKW*TYQNSAGRTAKNV 137
           G+LK+L  LTF+ + +  TQ    Y+        N+
Sbjct: 4   GVLKLLVLLTFLLHPSRCTQGKVNYREKEKEVLDNI 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,714
Number of Sequences: 438
Number of extensions: 2712
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)