Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_D04
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    27   2.7  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   4.7  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    26   6.2  

>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -3

Query: 261 GSVQLVRASRKKVCPGTPTSSRPVPGSL--LDDAIDLNLIQFFSSFN 127
           G V  ++ +++   P TPT++ P+P S+   D+A++ +   +F   +
Sbjct: 285 GKVDTLKVTKEDEDPTTPTNAIPIPSSMSKRDEALENDKDNYFDDLH 331


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +2

Query: 98  FI*DLFCVDLLNELKN*IKLRSMASSSKLPGTGLEEVGVPG---QTFLRDALTSCTDPLK 268
           ++ +L C  L ++ ++ +KL     SS   G+ +  + +PG   Q+ L+ A T+  D   
Sbjct: 92  YLMELLCPSLPHDTRSLVKLCKHVESSLASGSDVRSLLIPGSIDQSVLKVAATNNKDDSS 151

Query: 269 AIE 277
           A++
Sbjct: 152 AVK 154


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 675 GVEKLHLQTVTGCLAIFDAS 616
           G +  H     GCLA+FDAS
Sbjct: 412 GYDSFHTSNNRGCLALFDAS 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,532
Number of Sequences: 5004
Number of extensions: 53511
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)