Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_D04
         (884 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX255925-4|CAM24149.1|  580|Homo sapiens cofactor of BRCA1 (COBR...    99   1e-20
AF464935-1|AAL69965.1|  580|Homo sapiens cofactor of BRCA1 protein.    99   1e-20
BC011892-1|AAH11892.1|  475|Homo sapiens COBRA1 protein protein.       61   6e-09
AK022651-1|BAB14157.1|  475|Homo sapiens protein ( Homo sapiens ...    59   2e-08

>BX255925-4|CAM24149.1|  580|Homo sapiens cofactor of BRCA1 (COBRA1)
           protein.
          Length = 580

 Score =   99 bits (238), Expect = 1e-20
 Identities = 58/193 (30%), Positives = 101/193 (52%), Gaps = 2/193 (1%)
 Frame = +2

Query: 194 GLEEVGVPGQTFLRDALTSCTDPLKAIEEFQLENGIXXXXXXXXXXXXXXHGVRRLDFHT 373
           GL+++GV     L++ LT+CT+PLKAIE+FQ ENG+              HG  RL+FH 
Sbjct: 4   GLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQ 63

Query: 374 SVLEELREKLIAHI-XXXXXXXXXXXXXXXXXXXXXXFPVVRVKALRPVIMGILKNIPHI 550
           SV +ELR+KL+  +                       F +V++ +L+PV+M ++K++P +
Sbjct: 64  SVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKV 123

Query: 551 DDKYLRVLVRDRELYNDTDTEGEASNMARQPVTVWR*SFSTPQSVHQGXKKMFYLIMKIS 730
            +K L++++ D+ELY     E +   + +    ++    S     +   K+      ++S
Sbjct: 124 PEKKLKLVMADKELYRACAVEVK-RQIWQDNQALFGDEVSPLLKQYILEKESALFSTELS 182

Query: 731 LIY-FFPPSPKVR 766
           +++ FF PSPK R
Sbjct: 183 VLHNFFSPSPKTR 195


>AF464935-1|AAL69965.1|  580|Homo sapiens cofactor of BRCA1 protein.
          Length = 580

 Score =   99 bits (238), Expect = 1e-20
 Identities = 58/193 (30%), Positives = 101/193 (52%), Gaps = 2/193 (1%)
 Frame = +2

Query: 194 GLEEVGVPGQTFLRDALTSCTDPLKAIEEFQLENGIXXXXXXXXXXXXXXHGVRRLDFHT 373
           GL+++GV     L++ LT+CT+PLKAIE+FQ ENG+              HG  RL+FH 
Sbjct: 4   GLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQ 63

Query: 374 SVLEELREKLIAHI-XXXXXXXXXXXXXXXXXXXXXXFPVVRVKALRPVIMGILKNIPHI 550
           SV +ELR+KL+  +                       F +V++ +L+PV+M ++K++P +
Sbjct: 64  SVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKV 123

Query: 551 DDKYLRVLVRDRELYNDTDTEGEASNMARQPVTVWR*SFSTPQSVHQGXKKMFYLIMKIS 730
            +K L++++ D+ELY     E +   + +    ++    S     +   K+      ++S
Sbjct: 124 PEKKLKLVMADKELYRACAVEVK-RQIWQDNQALFGDEVSPLLKQYILEKESALFSTELS 182

Query: 731 LIY-FFPPSPKVR 766
           +++ FF PSPK R
Sbjct: 183 VLHNFFSPSPKTR 195


>BC011892-1|AAH11892.1|  475|Homo sapiens COBRA1 protein protein.
          Length = 475

 Score = 60.9 bits (141), Expect = 6e-09
 Identities = 34/67 (50%), Positives = 38/67 (56%)
 Frame = +3

Query: 609 LRVKRQIWQDNQSLFGDEVSPLLSQYIRXXRRCSI*S*KSH*SIFFPLHQK*EXXGAVVQ 788
           + VKRQIWQDNQ+LFGDEVSPLL QYI         +  S    FF    K    G VVQ
Sbjct: 38  VEVKRQIWQDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQ 97

Query: 789 XLAHMIG 809
            L  M+G
Sbjct: 98  RLTRMVG 104



 Score = 38.3 bits (85), Expect = 0.037
 Identities = 23/89 (25%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
 Frame = +2

Query: 503 ALRPVIMGILKNIPHIDDKYLRVLVRDRELYNDTDTEGEASNMARQPVTVWR*SFSTPQS 682
           +L+PV+M ++K++P + +K L++++ D+ELY     E +   + +    ++    S    
Sbjct: 3   SLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVK-RQIWQDNQALFGDEVSPLLK 61

Query: 683 VHQGXKKMFYLIMKISLIY-FFPPSPKVR 766
            +   K+      ++S+++ FF PSPK R
Sbjct: 62  QYILEKESALFSTELSVLHNFFSPSPKTR 90


>AK022651-1|BAB14157.1|  475|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12589 fis, clone NT2RM4001258. ).
          Length = 475

 Score = 59.3 bits (137), Expect = 2e-08
 Identities = 33/67 (49%), Positives = 37/67 (55%)
 Frame = +3

Query: 609 LRVKRQIWQDNQSLFGDEVSPLLSQYIRXXRRCSI*S*KSH*SIFFPLHQK*EXXGAVVQ 788
           + VKRQIWQDNQ+ FGDEVSPLL QYI         +  S    FF    K    G VVQ
Sbjct: 38  VEVKRQIWQDNQAFFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQ 97

Query: 789 XLAHMIG 809
            L  M+G
Sbjct: 98  RLTRMVG 104



 Score = 37.5 bits (83), Expect = 0.064
 Identities = 23/89 (25%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
 Frame = +2

Query: 503 ALRPVIMGILKNIPHIDDKYLRVLVRDRELYNDTDTEGEASNMARQPVTVWR*SFSTPQS 682
           +L+PV+M ++K++P + +K L++++ D+ELY     E +   + +     +    S    
Sbjct: 3   SLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVK-RQIWQDNQAFFGDEVSPLLK 61

Query: 683 VHQGXKKMFYLIMKISLIY-FFPPSPKVR 766
            +   K+      ++S+++ FF PSPK R
Sbjct: 62  QYILEKESALFSTELSVLHNFFSPSPKTR 90


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,349,492
Number of Sequences: 237096
Number of extensions: 1804261
Number of successful extensions: 2826
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2813
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)