Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_D03
         (965 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    41   3e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    35   0.015
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.020
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.24 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.74 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.98 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   4.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.0  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   6.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 24/74 (32%), Positives = 27/74 (36%)
 Frame = +2

Query: 737 PNPHPRG*XPNAGXPPPXXPPXRXAPXGXPPPPXXPGXXRDXTXPPFGXGXGXSSKXXPP 916
           P P PR   P+ G  PP     R       PPP  PG       PP G     S+   P 
Sbjct: 362 PPPPPRS-APSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA-PALPPLGNASRTSTPPVPT 419

Query: 917 GLGXPPSREXAXPP 958
               PPS   + PP
Sbjct: 420 PPSLPPSAPPSLPP 433



 Score = 33.9 bits (74), Expect = 0.034
 Identities = 25/80 (31%), Positives = 28/80 (35%), Gaps = 15/80 (18%)
 Frame = +2

Query: 767 NAGXPPPXXPPXRX------APXGXPPPPXXPGXXRDXTXPPFGXGXGXSSKXXPP---- 916
           N+   PP  PP         A     PPP  P   R+   PP G G   SS   PP    
Sbjct: 285 NSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344

Query: 917 -----GLGXPPSREXAXPPP 961
                 +  PP    A PPP
Sbjct: 345 SNAAGSIPLPPQGRSAPPPP 364



 Score = 32.7 bits (71), Expect = 0.080
 Identities = 24/74 (32%), Positives = 25/74 (33%)
 Frame = +2

Query: 737 PNPHPRG*XPNAGXPPPXXPPXRXAPXGXPPPPXXPGXXRDXTXPPFGXGXGXSSKXXPP 916
           P P PR    NA    P  P  R AP   PPPP           PP       S+   PP
Sbjct: 339 PPPPPRS---NAAGSIPLPPQGRSAP---PPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392

Query: 917 GLGXPPSREXAXPP 958
               P     A PP
Sbjct: 393 P-AIPGRSAPALPP 405



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 23/67 (34%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
 Frame = +2

Query: 764 PNAGXPPPXXPPXRXAP-XGXPPPPXXPGXXRDXTXPPFGXGXGXSSKXXPPGLGXPPSR 940
           P  G   P  PP R AP  G  PPP            P     G S+   PP LG   SR
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP-LGN-ASR 411

Query: 941 EXAXPPP 961
               P P
Sbjct: 412 TSTPPVP 418



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 22/77 (28%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
 Frame = +2

Query: 737 PNPHPRG*XPNAGXPPPXXPPXR--XAPXGXPPPPXXPGXXRDXTXPPFGXGXGXSSKXX 910
           P P P    P+A   PP  PP      P G P  P  P        PP   G   +    
Sbjct: 416 PVPTPPSLPPSA---PPSLPPSAPPSLPMGAPAAPPLP--PSAPIAPPLPAGMPAAPPLP 470

Query: 911 PPGLGXPPSREXAXPPP 961
           P     PP+   A   P
Sbjct: 471 PAAPAPPPAPAPAPAAP 487


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 35.1 bits (77), Expect = 0.015
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +2

Query: 773 GXPPPXXPPXRXAPXGXPPPPXXPG 847
           G PPP  PP    P   PPPP  PG
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.7 bits (76), Expect = 0.020
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +2

Query: 764 PNAGXPPPXXPPXRXAPXGXPPPPXXP 844
           P  G PPP  PP   A  G PPPP  P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 32.3 bits (70), Expect = 0.11
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +2

Query: 737 PNPHPRG*XPNAGXPPPXXPPXRXAPXGXPPPPXXPGXXRDXTXPP 874
           P P P    P     P   PP      G PPPP  PG       PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
 Frame = +2

Query: 779 PPPXX--PPXRXAPXGXPPPPXXPGXXRDXTXPPFGXGXGXSSKXXPP 916
           PPP    P    AP   PPP    G       PP   G G      PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +2

Query: 770 AGXPPPXXPPXRXAPXGXPPPPXXPGXXRDXTXPP 874
           A  P P   P    P   PPPP   G       PP
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
 Frame = +2

Query: 737 PNPHPRG*XPNAGXPPPXXPPXRXAPXG----XPPPPXXPGXXRDXT 865
           P P P G    AG PPP  PP   +  G     P P   P    D T
Sbjct: 763 PPPPPPG-VAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPKIDET 808


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +2

Query: 737  PNPHPRG*XPNAGXPPPXXPPXRXAPXGXPPPP 835
            P P P    P +  PPP  PP    P   PPPP
Sbjct: 1705 PTPPP---PPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 20/75 (26%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
 Frame = +2

Query: 740 NPHPRG*XPNAGXPPPXXPPXRXAPXGXPPPPXXPGXXRDXTXPPFGXGXGXS-SKXXPP 916
           +P P    P+A  P    P     P   PPPP       D   P      G + S   PP
Sbjct: 166 SPPPSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPP 225

Query: 917 GLGXPPSREXAXPPP 961
                 +     PPP
Sbjct: 226 TYTPKQADPLPAPPP 240


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 25/79 (31%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
 Frame = -3

Query: 957 GGXAXSRXGGXPXPGGXXXEEXPXPXPKGGXVXSRXXPGXXGGG-----GXPXGAXRXGG 793
           GG      G  P PGG            GG        G  GGG     G P G     G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGG-----FGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245

Query: 792 XXGGGXPALGX*PRGWGXG 736
             GGG    G  P G+G G
Sbjct: 246 GFGGGLGGFGGGPGGFGGG 264



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -3

Query: 843 GXXGGGGXPXGAXRXGGXXGGGXPALGX*PRGWG 742
           G  G GG P G     G  GGG    G  P G G
Sbjct: 236 GPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = -3

Query: 885 PXPKGGXVXSRXXPGXXGGGGXPXGAXRXGGXXGGGXPALG 763
           P  +GG   SR   G   GG    G  R G   GG   A G
Sbjct: 5   PGSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARG 45



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 17/51 (33%), Positives = 17/51 (33%)
 Frame = -1

Query: 914 GGRXXKRXPTLXQRGXXXGPGXXLVXGXGGGXXGGXLGEGGXXGGEXRRWG 762
           GGR   R       G   G G       GGG  G   G GG  G    R G
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +1

Query: 796  PSPXXPPXXPPPXPXTRXXPGPHXXP 873
            P P  PP  PPP P +     P   P
Sbjct: 961  PRPAAPPSIPPPLPVSNILSSPTSEP 986


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
 Frame = +2

Query: 782 PPXXPPXRXAPXGXPPP-------PXXPGXXRDXTXPPFGXGXGXSSK----XXPPGLGX 928
           PP  PP    P G P P       P  PG     T PP   G   +S+      PPG+  
Sbjct: 522 PPMVPPGMALPPGMPAPFPGYPAVPAMPGIP-GATAPPGAPGSYNTSESSNLNAPPGVSM 580

Query: 929 P 931
           P
Sbjct: 581 P 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,808,511
Number of Sequences: 5004
Number of extensions: 21483
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)