Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_D02
(955 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 38 0.002
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 35 0.019
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.24
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.9
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/56 (35%), Positives = 21/56 (37%)
Frame = +3
Query: 216 RFXLASXPXXXPVXXXXXTAPXXXETPPPGXGXPPXGGGXPPPXXKXXXXGGPPPP 383
+ L S P P AP PPP P GG PPP GPPPP
Sbjct: 726 KLLLKSPPPPPPAVIVPTPAPAPIPVPPPA---PIMGGPPPPPPPPGVAGAGPPPP 778
Score = 29.9 bits (64), Expect = 0.55
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +1
Query: 802 PPPXPXXXKXXXPPXGXGXPPPAXPXXXXXRXPPPXXRPSP 924
P P P P G G PPP P PPP P P
Sbjct: 744 PAPAPIPVPPPAPIMG-GPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.9 bits (64), Expect = 0.55
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 549 PPPPXGGGXFXXGPPPXPP 605
PPPP G GPPP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780
Score = 29.1 bits (62), Expect = 0.97
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +1
Query: 799 PPPPXPXXXKXXXPPXGXGXPPPAXPXXXXXRXPPPXXRPSP 924
PPPP P PP PP P P P P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +1
Query: 799 PPPPXPXXXKXXXPPXGXGXPPPAXPXXXXXRXPPP 906
PPPP P P PPPA P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPA-PIMGGPPPPPP 766
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 549 PPPPXGGGXFXXGPPPXPP 605
PPPP G PPP PP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/41 (31%), Positives = 13/41 (31%)
Frame = +1
Query: 802 PPPXPXXXKXXXPPXGXGXPPPAXPXXXXXRXPPPXXRPSP 924
P P P P G PPP P PP P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 549 PPPPXGGGXFXXGPPPXPP 605
PPPP G PPP PP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 550 PPPXGGGGXFXGXPPPXPP 606
PPP G G PPP PP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783
Score = 25.8 bits (54), Expect = 9.0
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = +2
Query: 749 PPXPGXAGPXCXXXTXXPPPPXQXXXXXXPPXGGXGXPPPRXXXXXXXAXPPPXHAPP 922
PP P P PPP P GG PPP A PPP PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPA-------PIMGGP--PPPPPPPGVAGAGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 549 PPPPXGGGXFXXGPPPXPP 605
PPPP G PPP PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 34.7 bits (76), Expect = 0.019
Identities = 19/67 (28%), Positives = 20/67 (29%)
Frame = +2
Query: 752 PXPGXAGPXCXXXTXXPPPPXQXXXXXXPPXGGXGXPPPRXXXXXXXAXPPPXHAPPRXX 931
P P A P + PP P P G PP PPP APP
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPK 1202
Query: 932 XXXXKPP 952
PP
Sbjct: 1203 PSVGVPP 1209
Score = 29.1 bits (62), Expect = 0.97
Identities = 19/73 (26%), Positives = 22/73 (30%), Gaps = 1/73 (1%)
Frame = +2
Query: 737 PXRXPPXPGXAG-PXCXXXTXXPPPPXQXXXXXXPPXGGXGXPPPRXXXXXXXAXPPPXH 913
P PP P +G P + PP + P G PP P P
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 914 APPRXXXXXXKPP 952
APP PP
Sbjct: 1139 APPVPKPSVAAPP 1151
Score = 26.6 bits (56), Expect = 5.1
Identities = 17/67 (25%), Positives = 19/67 (28%)
Frame = +2
Query: 752 PXPGXAGPXCXXXTXXPPPPXQXXXXXXPPXGGXGXPPPRXXXXXXXAXPPPXHAPPRXX 931
P P A P + PP + P PP PPP APP
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPT 1221
Query: 932 XXXXKPP 952
PP
Sbjct: 1222 PSAGLPP 1228
Score = 25.8 bits (54), Expect = 9.0
Identities = 18/67 (26%), Positives = 19/67 (28%)
Frame = +2
Query: 752 PXPGXAGPXCXXXTXXPPPPXQXXXXXXPPXGGXGXPPPRXXXXXXXAXPPPXHAPPRXX 931
P P A P + PP P P G PP P P APP
Sbjct: 1105 PKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPS-GAPPVPKPSVAAPPVPAPSGAPPVPK 1163
Query: 932 XXXXKPP 952
PP
Sbjct: 1164 PSVAAPP 1170
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.24
Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Frame = +1
Query: 799 PPPPXPXXXKXXXPPXGXG-----XPPPAXPXXXXXRXP---PPXXRPSPXXPXXXXTP 951
PPPP P PP G G PPP P PP R +P P P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +3
Query: 294 PPPGXGXPPXGGGXPPPXXKXXXXGGPPPP 383
PPP P G PPP PP P
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/53 (28%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Frame = +2
Query: 800 PPPPXQXXXXXXP--PXGGXGXPPPRXXXXXXXAXPPPXHAPPRXXXXXXKPP 952
PPPP P P G PPP PP + R PP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Frame = +1
Query: 805 PPXPXXXKXXXP-PXGXGXPPPAXPXXXXXRXPPPXXRPSPXXP 933
PP P P P G PP P PPP P+P P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPA---PPPAPAPAPAAP 487
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +3
Query: 297 PPGXGXPPXGGGXPPPXXKXXXXGGPPPPXXXXKK 401
PPG PP PPP + PPPP KK
Sbjct: 5 PPGNPPPPP----PPPGFEPPSQPPPPPPPGYVKK 35
Score = 27.1 bits (57), Expect = 3.9
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 526 PPPPPPXGXXKKK 488
PPPPPP G KK+
Sbjct: 24 PPPPPPPGYVKKR 36
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/53 (30%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Frame = +1
Query: 802 PPPXPXXXKXXX---PPXGXGXPPPAXPXXXXXRXPPPXXRPSPXXPXXXXTP 951
PPP P PP PPPA P P PS P P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,871,729
Number of Sequences: 5004
Number of extensions: 27624
Number of successful extensions: 203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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