Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C24
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   3.8  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    27   5.0  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    26   6.6  

>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 154 VVDLFQSLGPGYYYLPSWLQVAISL-FIHNLIN 59
           +VD   SL PGY YLP  LQ + +L F   L+N
Sbjct: 512 LVDQIWSLLPGYCYLPLDLQSSFTLEFASILVN 544


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 145 LFQSLGPGYYYLPSWLQVA-ISLFIHNLIN 59
           LF +L P   Y P WL+ A +S+  H   N
Sbjct: 148 LFSTLAPNLKYFPDWLKEAGVSVSDHRAFN 177


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 731 DEPIPLAPPNDRAQX-VSERGNXXAPNTQTASPRGLADSLMQKK 603
           + P+  +P + RA   + E+G   AP+ +  S R   DS+ +++
Sbjct: 154 EPPLDASPVSSRASGALGEKGRYIAPHLRAGSGRESGDSMFKRE 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,930
Number of Sequences: 5004
Number of extensions: 43082
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)