Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C23
         (1004 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.59 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.3  
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   9.6  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -2

Query: 295 FFLXFXXXFXXFFFFXXXXFXFXXXXFXXXFFFFFFFFXXXFFXPF 158
           FFL F   F  F FF    F      F    F FFFF     F  F
Sbjct: 125 FFLSFSFSFS-FLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSF 169


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 779 GGXPGGXPPXXXGEXPPPPPP 717
           G  P   PP   G  PPPPPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
 Frame = -1

Query: 779 GGXPGGXPPXXX---GEXPPPPPP 717
           GG P   PP      G  PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -3

Query: 450 PKKXXXPPPXSXXXQFXPPXFXXGGPPPP 364
           P     P P        PP    GGPPPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = -1

Query: 398 PXXFXGGGPXPPKXXX--GXGXPXPPP 324
           P    GG P PP      G G P PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 755 PXXXGEXPPPPPPXXGG 705
           P   G  PPPPPP   G
Sbjct: 756 PIMGGPPPPPPPPGVAG 772


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/43 (32%), Positives = 15/43 (34%)
 Frame = +3

Query: 705 PPXGGGGGXGXFPTXXXGXPPRXXPLXXPPXPPXGGAXPXXGP 833
           PP G G      P      PPR       P PP G + P   P
Sbjct: 325 PPIGNGSSNSSLPPPPP--PPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
 Frame = +1

Query: 763 PPGXPPSXXPRPPPXGGP-XPXXAP 834
           PP  PPS  P  PP   P  P  AP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAP 444


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 763 PPGXPPSXXPRPPPXGGPXPXXAP 834
           PPG PP   P PPP G   P   P
Sbjct: 5   PPGNPP---PPPPPPGFEPPSQPP 25


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 848 KTPXPGAXXGXGPPXGGGRGXXEGGXPG 765
           +T  PG   G G   G GRG   GG  G
Sbjct: 131 RTNVPGMSRGRGRGRGRGRGRGRGGYRG 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.150    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,850
Number of Sequences: 5004
Number of extensions: 21394
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 521265546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)