Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_C22
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 103 4e-23
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 56 5e-09
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 50 4e-07
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 48 2e-06
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 46 5e-06
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 46 9e-06
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 44 4e-05
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 44 4e-05
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 43 7e-05
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 38 0.002
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 38 0.003
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 35 0.013
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 35 0.018
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 34 0.031
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 33 0.071
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 32 0.094
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 30 0.50
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 28 1.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.7
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 27 3.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 4.7
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 103 bits (246), Expect = 4e-23
Identities = 46/68 (67%), Positives = 57/68 (83%)
Frame = +2
Query: 362 KSAITIQFFQKLFVTDYDPTIEDSYIQHTEVDGQWCILDVLDTAGQEEFSAMREQYMRKG 541
KSA+TIQ Q FV +YDPTIEDSY + E+DG+ +LDVLDTAGQEE+SAMREQYMR G
Sbjct: 21 KSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQEEYSAMREQYMRTG 80
Query: 542 DGFLIVFS 565
+GFL+V++
Sbjct: 81 EGFLLVYN 88
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/28 (53%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Frame = +1
Query: 574 TSRASXNX-RHFHTQILRVKDRDSYPMV 654
TSR+S + F+ QILRVKD+D++P+V
Sbjct: 90 TSRSSFDEISTFYQQILRVKDKDTFPVV 117
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 56.4 bits (130), Expect = 5e-09
Identities = 23/68 (33%), Positives = 46/68 (67%)
Frame = +2
Query: 362 KSAITIQFFQKLFVTDYDPTIEDSYIQHTEVDGQWCILDVLDTAGQEEFSAMREQYMRKG 541
KS++T+Q+ + FV Y PTIE+++ ++ + GQ +++DTAGQ+E+S + ++
Sbjct: 19 KSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEYSILNSKHSIGI 78
Query: 542 DGFLIVFS 565
G+++V+S
Sbjct: 79 HGYVLVYS 86
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 50.0 bits (114), Expect = 4e-07
Identities = 26/88 (29%), Positives = 42/88 (47%)
Frame = +2
Query: 317 LPTVKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYIQHTEVDGQWCILDVLDTAG 496
+PT+K K+ + I + F +DY PT+ D+Y + + L + DTAG
Sbjct: 1 MPTIKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAG 60
Query: 497 QEEFSAMREQYMRKGDGFLIVFSXDGQA 580
QE++ +R + D FL+ FS A
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVTSPA 88
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 47.6 bits (108), Expect = 2e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Frame = +2
Query: 362 KSAITIQFFQKLFVTDYDPTIEDSYIQHTEVDGQWCILDVLDTAGQEEFSAMREQYMRKG 541
K+++ F F T+Y PT+ ++Y+ VDG+ L + DTAGQEE+ +R K
Sbjct: 21 KTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYERLRPMSYAKA 80
Query: 542 DGFLIVFSXD 571
L+ F+ D
Sbjct: 81 HIILVGFAID 90
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 46.4 bits (105), Expect = 5e-06
Identities = 25/70 (35%), Positives = 37/70 (52%)
Frame = +2
Query: 362 KSAITIQFFQKLFVTDYDPTIEDSYIQHTEVDGQWCILDVLDTAGQEEFSAMREQYMRKG 541
K+ + I F + F Y PT+ ++Y+ EVDG+ L + DTAGQE++ +R
Sbjct: 19 KTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDYDRLRPLSYPDS 78
Query: 542 DGFLIVFSXD 571
LI FS D
Sbjct: 79 HVVLICFSVD 88
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 45.6 bits (103), Expect = 9e-06
Identities = 24/70 (34%), Positives = 37/70 (52%)
Frame = +2
Query: 362 KSAITIQFFQKLFVTDYDPTIEDSYIQHTEVDGQWCILDVLDTAGQEEFSAMREQYMRKG 541
K+ + I F + F Y PT+ ++Y+ EVDG+ L + DTAGQE++ +R
Sbjct: 19 KTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDYDRLRPLSYPDS 78
Query: 542 DGFLIVFSXD 571
LI F+ D
Sbjct: 79 HVILICFAVD 88
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 43.6 bits (98), Expect = 4e-05
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 362 KSAITIQFFQKLFVTDYDPTIE-DSYIQHTEVDGQWCILDVLDTAGQEEFSAMREQYMRK 538
KS + ++F + Y TI D I+ E++G+ L + DTAGQE F + Y R
Sbjct: 21 KSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRG 80
Query: 539 GDGFLIVFSXDGQ 577
G +IV+ Q
Sbjct: 81 AHGIIIVYDVTDQ 93
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 43.6 bits (98), Expect = 4e-05
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +2
Query: 362 KSAITIQFFQKLFVTDYDPTIEDSYIQHTEVDGQWCILDVLDTAGQEEFSAMREQYMRKG 541
K+++ F + F Y+PTI ++YI VDG L + DTAGQEE+ +R
Sbjct: 26 KTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQLRSLSYSDT 85
Query: 542 DGFLIVFSXDGQ 577
+I F+ D +
Sbjct: 86 HVIMICFAVDSR 97
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 42.7 bits (96), Expect = 7e-05
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 326 VKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYIQHTEVDGQWCILDVLDTAGQE 502
+KL KS + ++F + F + TI D I+ E+DG+ L + DTAGQE
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 503 EFSAMREQYMRKGDGFLIVF 562
F + Y R G L+++
Sbjct: 70 RFRTITTAYYRGAMGILLLY 89
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 362 KSAITIQFFQKLFVTDYDPTIEDSYI-QHTEVDGQWCILDVLDTAGQEEFSAMREQYMRK 538
K++I Q+ + F DY TI ++ + VD + L + DTAGQE F ++ + R
Sbjct: 21 KTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRG 80
Query: 539 GDGFLIVF 562
D ++V+
Sbjct: 81 ADCCVLVY 88
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 37.5 bits (83), Expect = 0.003
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 362 KSAITIQFFQKLFVTDYDPTIEDSYI-QHTEVDGQWCILDVLDTAGQEEFSAMREQYMRK 538
K+ + QF + F +Y TI ++ + VD + L + DTAGQE F ++ + R
Sbjct: 21 KTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRG 80
Query: 539 GDGFLIVFS 565
D +IV++
Sbjct: 81 ADCCVIVYN 89
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 35.1 bits (77), Expect = 0.013
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +2
Query: 311 ENLPTV--KLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYIQHT-EVDGQWCI-LD 478
+N+ T+ KL KS++ ++F + F + TI +++ T +D + L+
Sbjct: 8 KNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLE 67
Query: 479 VLDTAGQEEFSAMREQYMRKGDGFLIVF 562
+ DTAGQE + ++ Y R + ++V+
Sbjct: 68 IWDTAGQERYKSLAPMYYRNANCAIVVY 95
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 34.7 bits (76), Expect = 0.018
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +2
Query: 362 KSAITIQFFQKLFVTDYDPTIEDSYIQHTEVDGQWCILDVL--DTAGQEEFSAMREQYMR 535
K+ + I F F Y PT+ ++YI ++++ DTAGQEE+ +R
Sbjct: 27 KTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQEEYDRLRPLSYP 86
Query: 536 KGDGFLIVFSXD 571
+ L+ FS D
Sbjct: 87 NSNVILLCFSID 98
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 33.9 bits (74), Expect = 0.031
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 314 NLPTVKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYIQHTE-VDGQWCILDVLDT 490
+L KL K+++ +F F Y TI ++ T ++ + L + DT
Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 67
Query: 491 AGQEEFSAMREQYMRKGDGFLIVF 562
AGQE F ++ Y+R +IV+
Sbjct: 68 AGQERFRSLIPSYIRDSSVAIIVY 91
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 32.7 bits (71), Expect = 0.071
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +2
Query: 311 ENLPTVKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYIQHTEVD-GQWCILDVL 484
+N+PT KL K+ + F Y T+ + + H + G+ C +V
Sbjct: 5 QNVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICF-NVW 63
Query: 485 DTAGQEEFSAMREQYMRKGDGFLIVF 562
DTAGQE+ +R+ Y +G +I+F
Sbjct: 64 DTAGQEKLGGLRDGYYIQGQCGIIMF 89
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 32.3 bits (70), Expect = 0.094
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 362 KSAITIQFFQKLFVTDYDPTIEDSYIQHTEV-DGQWCILDVLDTAGQEEFSAMREQYMRK 538
KS + ++F + F + TI + V D + + DTAGQE + A+ Y R
Sbjct: 23 KSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRG 82
Query: 539 GDGFLIVFSXDGQA 580
G LIV+ Q+
Sbjct: 83 AVGALIVYDITKQS 96
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 29.9 bits (64), Expect = 0.50
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 473 LDVLDTAGQEEFSAMREQYMRKGDGFLIVF 562
L + DTAGQE+F ++ Y R G ++V+
Sbjct: 64 LQIWDTAGQEKFRSVARNYYRGAAGAVLVY 93
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 401 VTDYDPTIEDSYIQHTEVDGQWCILDV 481
+TD DP +E S ++H + +W L+V
Sbjct: 1407 ITDIDPDMEKSKVEHKRLAQEWAGLEV 1433
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/69 (28%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
Frame = +3
Query: 681 APPXXAXGRRX-LXRPXAXPPXT*RPXPXDPPFXXXXAXPXXGPXHPXPPXXXGTXXPPN 857
APP GR P T P PP A P P P PP
Sbjct: 390 APPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPL 449
Query: 858 PXSGXXXPP 884
P S PP
Sbjct: 450 PPSAPIAPP 458
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Frame = +3
Query: 681 APPXXAX-GRRXLXRPXAXPPXT*RPXPXDPPFXXXX-AXPXXGPXHPXPPXXXGTXXPP 854
APP A G + +P P +P PP A P P PP + PP
Sbjct: 1082 APPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141
Query: 855 NPXSGXXXPP 884
P PP
Sbjct: 1142 VPKPSVAAPP 1151
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 392 KLFVTDYDPTIEDSYIQHTEVDGQWCILDVLDTAGQEEFSAMRE 523
K+F DY D Q+ D ++C V D AG + ++ E
Sbjct: 145 KIFAVDYSEKAIDVVKQNPLYDAKFCSASVWDLAGSDLLRSIEE 188
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Frame = +3
Query: 714 LXRPXAXPPXT*RPXPXDPPFXXXXAXPXXGPX--HPXPPXXXGTXXPPNP 860
L P PP P P P P G P PP G PP P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 4.7
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = -3
Query: 636 SVLNPEDLSVEVTXVXRSSACPSXENTMRKPSPFRMYCSRIALNSSCPAVSSTSRMHH*P 457
SVLN ++ + + SS + + + +P S +NSS P SST+ P
Sbjct: 3112 SVLN-SSTAITSSSILNSSTPITSSSILNSSTPIT---SSTVVNSSTPITSSTTLNTSTP 3167
Query: 456 STSVCCM*ESSIVGS*SVTNN 394
TS + S+ + S S+ N+
Sbjct: 3168 ITSSSVLNSSTAITSSSIVNS 3188
Score = 25.8 bits (54), Expect = 8.2
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = -3
Query: 636 SVLNPEDLSVEVTXVXRSSACPSXENTMRKPSPFRMYCSRIALNSSCPAVSSTSRMHH*P 457
S+LN + + V SS + + + +P S LNSS P SST+ P
Sbjct: 400 SILNTST-PITSSSVLNSSTPITSSSILNSSTPIT---SSTVLNSSTPITSSTALNTSTP 455
Query: 456 STSVCCM*ESSIVGS*SVTNN 394
TS + S+ + S SV N+
Sbjct: 456 ITSSSVLNSSTPITSSSVLNS 476
Score = 25.8 bits (54), Expect = 8.2
Identities = 25/81 (30%), Positives = 35/81 (43%)
Frame = -3
Query: 636 SVLNPEDLSVEVTXVXRSSACPSXENTMRKPSPFRMYCSRIALNSSCPAVSSTSRMHH*P 457
SVLN T + S+ S + + +P S LNSS P SST+ P
Sbjct: 1864 SVLNSSTPITSSTALNTSTPITS-SSVLNSSTPIT---SSTVLNSSTPITSSTALNTSTP 1919
Query: 456 STSVCCM*ESSIVGS*SVTNN 394
TS + S+ + S SV N+
Sbjct: 1920 ITSSSVLNSSTPITSSSVLNS 1940
Score = 25.8 bits (54), Expect = 8.2
Identities = 25/81 (30%), Positives = 35/81 (43%)
Frame = -3
Query: 636 SVLNPEDLSVEVTXVXRSSACPSXENTMRKPSPFRMYCSRIALNSSCPAVSSTSRMHH*P 457
SVLN T + S+ S + + +P S LNSS P SST+ P
Sbjct: 2056 SVLNSSTPITSSTALNTSTPITS-SSVLNSSTPIT---SSTVLNSSTPITSSTALNTSTP 2111
Query: 456 STSVCCM*ESSIVGS*SVTNN 394
TS + S+ + S SV N+
Sbjct: 2112 ITSSSVLNSSTPITSSSVLNS 2132
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 522 SRIALNSSCPAVSSTSRMHH*PSTSVCCM*ESSIVGS*SVTNN 394
S LNSS P SST+ P TS + S+ + S S+ N+
Sbjct: 3062 SSSVLNSSTPITSSTALNTSTPITSSSVLNSSTAITSSSIVNS 3104
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 522 SRIALNSSCPAVSSTSRMHH*PSTSVCCM*ESSIVGS*SVTNN 394
S LNSS P SST+ P TS + S+ + S SV N+
Sbjct: 3194 SSSVLNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSSVLNS 3236
Score = 25.8 bits (54), Expect = 8.2
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = -3
Query: 636 SVLNPEDLSVEVTXVXRSSACPSXENTMRKPSPFRMYCSRIALNSSCPAVSSTSRMHH*P 457
SVLN ++ + + SS + + + +P S +NSS P SST+ P
Sbjct: 3340 SVLN-SSTAITSSSILNSSTPVTSSSVLNSSTPIT---SSTVVNSSTPITSSTALNTSTP 3395
Query: 456 STSVCCM*ESSIVGS*SVTNN 394
TS + S+ + S +V N+
Sbjct: 3396 ITSSSVLNSSTPITSSTVVNS 3416
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 522 SRIALNSSCPAVSSTSRMHH*PSTSVCCM*ESSIVGS*SVTNN 394
S ALN+S P SST P TS + S+ + S S+ N+
Sbjct: 3422 SSTALNTSTPITSSTVVNSSTPITSSSVLNSSTAIASSSILNS 3464
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,625
Number of Sequences: 5004
Number of extensions: 52428
Number of successful extensions: 235
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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