Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C21
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    30   0.38 
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    30   0.50 
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    29   1.1  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    26   8.1  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    26   8.1  

>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 237 KKKGRIRNHLRTLYMATISAEFALWRDINIFFLVKIPLI 353
           K   R++++ R  Y  T+ A + LW  + +F    +PL+
Sbjct: 155 KSYERLKSYFRKHYWPTLKANYILWPAVQLFNFTFVPLV 193


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 609 QCNLCKA-IIRSDSYQKHLMRHQSATHLVCEVCGKLYR 719
           +C+LCKA  +R    ++HL  H++    VCE   +  R
Sbjct: 474 RCDLCKAGFVRHHDLKRHLRIHENGRPYVCECLKRFNR 511


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 296 RICLMEGYQYIFSSKNTFNIQDAIKTITGI-EICETDSY 409
           R+ ++  Y Y  SSK T  + DA++    I EICE   Y
Sbjct: 46  RVRIIVLYHYYISSKTTDGMTDAVQKCRNIYEICEAFGY 84


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 459 KFRNTAIDSDKLLHQAVTADFQIDNAND--EDSNQSEEMPHVAYKEKKKLR 605
           K +N A   +K   +    D  +D +ND  +DS  S +      K+KKKL+
Sbjct: 17  KSKNVASHGEKRKVKRKKEDLSMDGSNDGVKDSPDSNDDSQSKKKKKKKLK 67


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 309 IRQILQILSPCTEFEGDCEFCLSFWDN 229
           +R ++ I   CT  E D    L FWD+
Sbjct: 177 LRSLVVIACLCTGIESDFSMALLFWDS 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,305,285
Number of Sequences: 5004
Number of extensions: 68380
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)