Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C21
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    28   0.098
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    24   2.1  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    24   2.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.5  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 0.098
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +3

Query: 609 QCNLC-KAIIRSDSYQKHLMRHQSATHLVCEVCGK 710
           +C +C K  I+S     H+  H      VC+ CGK
Sbjct: 177 KCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGK 211



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
 Frame = +3

Query: 612 CNLC-KAIIRSDSYQKHLMRHQSATHLVCEVCGKLY 716
           C  C K    S   + H   H       C++CGK +
Sbjct: 206 CKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSF 241


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 366 IASCILKVFLLEKIY*YPSIRQ 301
           IA  +  VFL +K   YPSIRQ
Sbjct: 9   IAVLLAIVFLFDKCSGYPSIRQ 30


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 645 SYQKHLM-RH-QSATHLVCEVCGKLYRXR 725
           S ++H   +H QS T  VCE C + YR +
Sbjct: 20  SLKRHFQDKHEQSDTLYVCEFCNRRYRTK 48


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 231 YPKKKGRIRNHLRTLYMATISAEFALWR-DINIFFLVKIPLI 353
           YP + G          M TI A+F L+     IFFL+ + +I
Sbjct: 187 YPPESGNYSADSAMCAMLTIYADFPLYELSTIIFFLIPMLII 228


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/48 (20%), Positives = 21/48 (43%)
 Frame = -2

Query: 294  QILSPCTEFEGDCEFCLSFWDNLTLRFFLSNFKNIYEDIRCTFYNRYL 151
            ++LS C   +G C   +     +  + +  N   + E    +FY+ +L
Sbjct: 916  ELLSSCVSNDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSSFYSSFL 963


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,692
Number of Sequences: 438
Number of extensions: 4459
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)