Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C18
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   5.8  
SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.8  
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    26   7.7  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 246 RRLFRMFTLYR*CYKLICCFR-NIWLPHETFFHFCIDVHVLF 124
           R  F  F +    Y  + CF+ N+  P + F H CI V V F
Sbjct: 187 RITFLAFVIAPYIYFSVRCFKKNVNNPKDIFLHLCIFVSVSF 228


>SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +1

Query: 304 LGEAEHYISAARQFIKAEMKLKSMKFYSPERENLEAGIGCFLQALNKYPEKSPIRTSLLM 483
           L E    I   +  +  E+KL        ER  L+A +   L+ L      SP+  + + 
Sbjct: 50  LNEVSSDIRNYQASLTKELKLLVDSLQEKERSKLQATVK--LEQLKVVSTNSPVENTQIS 107

Query: 484 ELASNLSTL 510
           EL + LS+L
Sbjct: 108 ELEARLSSL 116


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 169 RKPNVSEATNEFIALAIQCEHSEQPTFAGHSYVGAAKCEASVGNFL 306
           ++P ++    +      Q  H+E P F  H+Y   A C + +G FL
Sbjct: 369 KRPGLTPIEEKSTFTLRQFFHNEFPRFLPHAYPYYASCFSVLGAFL 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,042
Number of Sequences: 5004
Number of extensions: 57921
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)