Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C18
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical...    33   0.19 
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei...    28   9.6  
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot...    28   9.6  

>AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical
            protein Y48C3A.14 protein.
          Length = 855

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
 Frame = +1

Query: 277  KCEASVGNFLGEAEHYISAAR-------QFIKAEMKLKSMKFYSPERENLEAGIGC-FLQ 432
            KC + VG F G  +  + + R       QFIKAE K  S K  + E E+  +  GC F  
Sbjct: 743  KCPSVVGLFEGAIKVKVDSTRSCEQCDAQFIKAEFKPNSGKPGAIEYES-SSYEGCIFCD 801

Query: 433  ALNKYPEKSPIRTSLLMELASNLSTLGT*SGG 528
            A+ KYP+   +  + L E +   +T     GG
Sbjct: 802  AMKKYPDAINLNHAYLTEESRQRNTQAPRRGG 833


>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
            protein.
          Length = 1908

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +2

Query: 518  KAEAISYYQQALDTVVDYTMKLMALWNLMILRIDSEKFSMALET 649
            +   +++Y    + ++  T K  +L+NL IL   SEK S++++T
Sbjct: 1607 RLNTLAHYNVPNNAILTLTSKSNSLYNLSILSDRSEKSSVSMKT 1650


>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A protein.
          Length = 1951

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +2

Query: 518  KAEAISYYQQALDTVVDYTMKLMALWNLMILRIDSEKFSMALET 649
            +   +++Y    + ++  T K  +L+NL IL   SEK S++++T
Sbjct: 1613 RLNTLAHYNVPNNAILTLTSKSNSLYNLSILSDRSEKSSVSMKT 1656


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,240,768
Number of Sequences: 27780
Number of extensions: 332981
Number of successful extensions: 891
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)