Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_C17
(857 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74472-2|CAA98945.1| 188|Caenorhabditis elegans Hypothetical pr... 102 3e-22
Z81522-3|CAB04234.2| 167|Caenorhabditis elegans Hypothetical pr... 37 0.021
U39999-3|AAR85904.2| 114|Caenorhabditis elegans Insulin related... 32 0.45
AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical ... 31 1.4
Z82052-7|CAD89750.1| 294|Caenorhabditis elegans Hypothetical pr... 30 2.4
U28731-5|AAA68299.1| 125|Caenorhabditis elegans Hypothetical pr... 29 4.2
AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical... 29 4.2
Z78542-10|CAB01751.2| 428|Caenorhabditis elegans Hypothetical p... 28 7.4
U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone... 28 7.4
U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone... 28 7.4
U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone... 28 7.4
U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone... 28 7.4
AL031620-6|CAA20929.2| 428|Caenorhabditis elegans Hypothetical ... 28 7.4
AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear recep... 28 7.4
Z75549-2|CAA99916.1| 313|Caenorhabditis elegans Hypothetical pr... 28 9.8
>Z74472-2|CAA98945.1| 188|Caenorhabditis elegans Hypothetical
protein F23H12.2 protein.
Length = 188
Score = 102 bits (245), Expect = 3e-22
Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 5/157 (3%)
Frame = +3
Query: 123 MMEITRTTLGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERR---LNAQQNASRSRT 293
++ ++ + +A GIAG FLGYC+YFD +R P +K K+R++R A A R
Sbjct: 5 ILGFNKSNVVLAAGIAGAAFLGYCIYFDHKRINAPDYKDKIRQKRRAQAGAGGMAPRRPA 64
Query: 294 LGG--PVPDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSVL 467
G PD+ D MQRFFLQ++Q H+ AV +CG+++QLLS+
Sbjct: 65 AAGNDAAPDVTDPSQMQRFFLQEVQLGEELMAAGNVDEGAVHIANAVMLCGESQQLLSIF 124
Query: 468 QQTMPAPIFHLLLKKLPEVSERLRSSMKAXSNVMQEE 578
QQT+ F ++++LP ERL A ++ + E
Sbjct: 125 QQTLSEDQFRAVVQQLPSTRERLAEMFGAKADEAENE 161
>Z81522-3|CAB04234.2| 167|Caenorhabditis elegans Hypothetical
protein F32B4.2 protein.
Length = 167
Score = 36.7 bits (81), Expect = 0.021
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 8/142 (5%)
Frame = +3
Query: 150 GIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERRLNAQQNASRSRTLGGP-------V 308
G+ VG A L + Y+ Q+++ E ++S R GG +
Sbjct: 13 GVVVGGAALLAIAAYYYWSQKKKSSDTSSATSSESNDVVMMSSSEPRADGGADSKAKFNI 72
Query: 309 PDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXX-VEHLGQAVAVCGQTEQLLSVLQQTMPA 485
D N ++ F++Q+ H+ A+ + G+T QLL VL+ ++
Sbjct: 73 EDENVRRVCEKLFMEQMDLGEAYLEDEETEELGAIHMANAIVLTGETAQLLKVLRGSISP 132
Query: 486 PIFHLLLKKLPEVSERLRSSMK 551
F + K LP R+ ++
Sbjct: 133 AHFANIQKYLPSADLRVHQLLQ 154
>U39999-3|AAR85904.2| 114|Caenorhabditis elegans Insulin related
protein 15 protein.
Length = 114
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 122 NDGNHKNNVRYSCRNCGNTVLGLLCIL*PAKAQGSAVQKEVERAKTKCTTKC 277
ND ++N +S R+CG ++ + L G A+Q E+ RA C+T C
Sbjct: 23 NDFQPRDNKHHSYRSCGESLSRRVAFL----CNGGAIQTEILRALDCCSTGC 70
>AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical
protein Y54F10BM.3 protein.
Length = 745
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 180 FLGYCVYFDQQRRKDPLFKKKLRERRLN--AQQNASRSRTLGGPVPDMNDHEA 332
F YC + QQ R + + ++K ERRL ++ +AS++R GG P E+
Sbjct: 205 FGAYCYWKVQQWRDEKMAREKAWERRLARVSEVSASKNRNAGGVDPAKRPRES 257
>Z82052-7|CAD89750.1| 294|Caenorhabditis elegans Hypothetical
protein T25E12.12 protein.
Length = 294
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 578 RCRIKNCVFEEMKVNMVAIIIDF 646
R +K CVF E+KV+ +A+I+ F
Sbjct: 131 RIYVKTCVFGELKVSQIALILPF 153
>U28731-5|AAA68299.1| 125|Caenorhabditis elegans Hypothetical
protein F12A10.6 protein.
Length = 125
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -2
Query: 289 RDLEAFCCAFSLRSLNFFLNSGSLRLCWS----KYTQ*PKNSVPAI 164
RD E A + NSG+L +CW ++ P+NS+PAI
Sbjct: 51 RDKEKVRQAVEMVGAAKIFNSGNLPICWKFQFRQFADLPENSIPAI 96
>AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical
protein C15F1.2 protein.
Length = 801
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -1
Query: 425 SLPEMFDSSFKITCSQQLFAELNLLQEKSLH 333
SL + ++SF+ + S++ F + NL+QEK H
Sbjct: 683 SLRRLLNTSFEYSKSRECFHDANLIQEKCTH 713
>Z78542-10|CAB01751.2| 428|Caenorhabditis elegans Hypothetical
protein C18B12.6 protein.
Length = 428
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 599 VFEEMKVNMVAI-IIDFSLFLSVFCRYTYSYIILKK 703
V EE KV+ AI I F++ +FC TY+++ KK
Sbjct: 31 VKEEKKVSAGAISFICFTIIFCLFCTETYTFLFHKK 66
>U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform c protein.
Length = 440
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 557 EQRNAGRRCRIKNCVFEEMKVNMVAIIID 643
EQRNA R CR+K C+ M V ID
Sbjct: 69 EQRNACRSCRLKECIKVGMNPRAVQGDID 97
>U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform d protein.
Length = 446
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 557 EQRNAGRRCRIKNCVFEEMKVNMVAIIID 643
EQRNA R CR+K C+ M V ID
Sbjct: 77 EQRNACRSCRLKECIKVGMNPRAVQGDID 105
>U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform a protein.
Length = 448
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 557 EQRNAGRRCRIKNCVFEEMKVNMVAIIID 643
EQRNA R CR+K C+ M V ID
Sbjct: 77 EQRNACRSCRLKECIKVGMNPRAVQGDID 105
>U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform e protein.
Length = 450
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 557 EQRNAGRRCRIKNCVFEEMKVNMVAIIID 643
EQRNA R CR+K C+ M V ID
Sbjct: 77 EQRNACRSCRLKECIKVGMNPRAVQGDID 105
>AL031620-6|CAA20929.2| 428|Caenorhabditis elegans Hypothetical
protein C18B12.6 protein.
Length = 428
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 599 VFEEMKVNMVAI-IIDFSLFLSVFCRYTYSYIILKK 703
V EE KV+ AI I F++ +FC TY+++ KK
Sbjct: 31 VKEEKKVSAGAISFICFTIIFCLFCTETYTFLFHKK 66
>AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear receptor
NHR-21a protein.
Length = 458
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 557 EQRNAGRRCRIKNCVFEEMKVNMVAIIID 643
EQRNA R CR+K C+ M V ID
Sbjct: 89 EQRNACRSCRLKECIKVGMNPRAVQGDID 117
>Z75549-2|CAA99916.1| 313|Caenorhabditis elegans Hypothetical
protein T19C4.2 protein.
Length = 313
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 457 LVYFSKLCQLQSSICFLRSCQKFQNAS 537
L+YF +C L S IC ++SC AS
Sbjct: 174 LIYFQGVCTLCSLICNIKSCSIVWKAS 200
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,912,910
Number of Sequences: 27780
Number of extensions: 336784
Number of successful extensions: 1163
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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