Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C16
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    29   0.88 
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   6.2  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    26   8.2  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    26   8.2  
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    26   8.2  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   8.2  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 172  FVKTCLKSDPEFDDCSRDAVQKLFDALGPGLPEIGMPPLDPLNIPKIRILQG 327
            F++ CL SD   +D    +V K  +A+     E G+    P+N  KIR   G
Sbjct: 1226 FLRKCLPSDEGNEDDESSSVVKSANAIITSFLESGLALTIPINTVKIRYENG 1277


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 379  FGKTEVLMSQVDSKTYDFYTKVRV 450
            F   EVL S++ SK  D  TKVRV
Sbjct: 1787 FESKEVLTSRMSSKVQDVATKVRV 1810


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 334 DPLLAKFLFSEYLMGLVEAYLFPVDLAPKHRIVSVQHHENNHRT 203
           D +L KFLF E++ GL +A +    L  +       HH    R+
Sbjct: 43  DIMLHKFLFREHIRGLYKAGVTSTSLNTESSSTLGPHHFTRFRS 86


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +1

Query: 334 PVNVNAALDNVTVTGFGKTEVLMSQVDSKTYDFYTKVRVPKIRIEGTYDLKGKIL 498
           P+  N   ++   +G  K        D+  ++ ++ ++ PK++ EG+  LKG+ L
Sbjct: 172 PIITNLKTESSKSSGAKKATSNAKITDTMLFNHFSSIQKPKLKAEGS-TLKGQAL 225


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 160 TQPDFVKTCLKSDPEFDDCSRDAVQKLF 243
           T  DF+K CL++DP     + DA++  F
Sbjct: 263 TAKDFIKKCLENDPSKRLTAADALKHPF 290


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 214 NHRTRGHFSSTFSRNPVEFGNNQHLHDGSLMS 119
           NH  +G  +++FSRN  E  ++ H H  S++S
Sbjct: 152 NHSPKGPTTTSFSRN--ETQSSPHSHSASIIS 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,407
Number of Sequences: 5004
Number of extensions: 62757
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)