Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C14
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    28   1.6  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    28   2.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   6.3  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    26   8.3  

>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 56  VFANVTRRPHYRVSLLVSCETNLKIKRLLPLC*ERNP 166
           +F +VTR   YRV L   C   L++ + L    +R P
Sbjct: 522 LFRSVTREQGYRVMLKTRCSNGLRVSKYLGNFLQRTP 558


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 219 IRRQLPPVLLCTMAIFTAGFLSQHSGKSLL 130
           I+   P VLL  +  FT  +LS+H+G+ LL
Sbjct: 558 IKCNFPKVLLAQIDQFTDFYLSKHTGRKLL 587


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 377 RRLKEKKQPCHEISVDS*FINKTFYL*KCGTCCEI---ACVYETCR 505
           R + E K   +E SV +  IN +  +  CGTC  +   +C+ + C+
Sbjct: 185 RMIVELKNRLYECSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCK 230


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 62  ANVTRRPHYRVSLLVSCETNLKIKRLLPL 148
           A V   PH + SLL + + N K+ +L+P+
Sbjct: 418 ATVEEYPHLQPSLLPTFQRNRKVPKLVPV 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,851
Number of Sequences: 5004
Number of extensions: 47352
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)