Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C13
         (953 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   9.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   9.4  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 197 NCDNL*TN*KFFARSDNTYLDTQLTKL 117
           NC +L  +  FFA +D+ ++   +TKL
Sbjct: 446 NCRSLVASVPFFANADSNFVSDVVTKL 472


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 197 NCDNL*TN*KFFARSDNTYLDTQLTKL 117
           NC +L  +  FFA +D+ ++   +TKL
Sbjct: 414 NCRSLVASVPFFANADSNFVSDVVTKL 440


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 152 PILQKIFNSFIDCHNSTNMHMK 217
           P   +I+   ID ++S  MH K
Sbjct: 416 PAFYRIYKRIIDYYHSYKMHQK 437


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 152 PILQKIFNSFIDCHNSTNMHMK 217
           P   +I+   ID ++S  MH K
Sbjct: 416 PAFYRIYKRIIDYYHSYKMHQK 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,754
Number of Sequences: 438
Number of extensions: 1067
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)