Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C12
         (1015 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.60 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.60
 Identities = 31/125 (24%), Positives = 34/125 (27%), Gaps = 11/125 (8%)
 Frame = +3

Query: 666  PXGLXP-PPXNXAFPQTXGPX----PTPXRVXPXPXPXPIKXXXXXXXXXXXXPLXXPPC 830
            P G+ P P  + A P    P     P P      P P P              P+  P  
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSV 1147

Query: 831  VPXPXPPLXGXXXXXXXXXXWXXXXAPSR------KPPXXXRXPPXPXXGPPPPKPWXLX 992
               P P   G               APS       KP       P P   PP PKP    
Sbjct: 1148 AAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGV 1207

Query: 993  XQTPP 1007
               PP
Sbjct: 1208 PPVPP 1212


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 906  APSRKPPXXXRXPPXPXXGPPPPKPWXLXXQTPP 1007
            +P+  PP   + PP P   PPP +P     ++PP
Sbjct: 153  SPASAPPIPSKAPPIPSSLPPPAQP-AAPVKSPP 185


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/44 (31%), Positives = 15/44 (34%)
 Frame = +3

Query: 720 PXPTPXRVXPXPXPXPIKXXXXXXXXXXXXPLXXPPCVPXPXPP 851
           P P P  + P P P PI             P   PP V    PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = +3

Query: 909  PSRKPPXXXRXPPXPXXG--PPPPKPWXLXXQTPP 1007
            P+  P      PP P  G  PPPP P  +    PP
Sbjct: 742  PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,843
Number of Sequences: 5004
Number of extensions: 27077
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 527257104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)