Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C10
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    33   0.053
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    29   1.1  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    27   2.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   4.6  

>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 33.1 bits (72), Expect = 0.053
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 138 CYGDKSLGNTSVILISSNTLLETKNINA-XVNLKEVPYS 25
           C+ DK   ++S  LIS    LE +N NA  V L+E+PY+
Sbjct: 657 CFNDKEPDSSSSTLISDRQELEYRNPNAETVKLEEIPYN 695


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -1

Query: 667 EHFELADRS*KKICELYSIFILVLTKLN 584
           EH EL+  + +K+ E+ S+F+  LT+LN
Sbjct: 19  EHLELSSFNQEKLLEMISVFLSRLTRLN 46


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 251 LPKSNYMYDKK*K*NEIAYREKSLLNKWIFSITVNFW*VATWLY 382
           LP   YM  +K    E+ ++ + +LN+W+  I  NF  +   LY
Sbjct: 152 LPNPKYMDQQK----ELTWKMREILNEWLVEIHSNFCLMPETLY 191


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 427  TRWAVSSFTHLINKKKLKNFTSDFCFQRIQKEHFEIQRVFY 549
            T W ++ F H+  K KL +   +   +     + EIQ  FY
Sbjct: 2873 TAWLINRFAHVARKHKLPSVCLNQLTKIYTLPNIEIQEAFY 2913


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,013
Number of Sequences: 5004
Number of extensions: 59481
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)