Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C10
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z98877-7|CAB63403.1|  292|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical
           protein H12I19.4 protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/89 (25%), Positives = 40/89 (44%)
 Frame = -2

Query: 471 FFIDQMSERAHSPPGVKWLPWLKDVSYVQGYSQVATYQKLTVIENIHLFNRLFSL*AISF 292
           F+++  S +      +K++  +  V Y+  +  +  ++  TV  NI      F +  I  
Sbjct: 274 FYLEDSSCKLLRSTFLKYMGDISYVLYLVHWPVITFFKSTTVTSNIFCIVLTFIITIIVH 333

Query: 291 HFYFLSYI*FDFGKEGKLYPDF*KLVNSF 205
           HF+   Y+ FDF K   L   F   VN+F
Sbjct: 334 HFFEKQYLKFDF-KSIILLLTFLLAVNAF 361


>Z98877-7|CAB63403.1|  292|Caenorhabditis elegans Hypothetical
           protein Y69H2.6 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 462 DQMSERAHSPPGVKWLPW 409
           D+++E+ H P G++ LPW
Sbjct: 176 DELAEQEHDPNGIRLLPW 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,808,542
Number of Sequences: 27780
Number of extensions: 324367
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)