Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C08
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual       124   2e-29
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    32   0.12 
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      31   0.21 
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    29   0.65 
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    27   2.6  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   4.6  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   4.6  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    23   5.7  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    26   6.0  

>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score =  124 bits (299), Expect = 2e-29
 Identities = 66/173 (38%), Positives = 98/173 (56%)
 Frame = +2

Query: 338 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 517
           K  G+T  ISTA     +      L   L    +FES AE   R++VL  L ++  ++++
Sbjct: 4   KQWGITPPISTAPATEQENALNTALINELKNQNLFESPAESEKRVKVLDELQQITTEFVK 63

Query: 518 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLL 697
             SL K+M   +A+  GG I+T+GSYRLGV+  G+DID L V P+H+ R ++F     +L
Sbjct: 64  KVSLAKHMNEKMANEAGGKIFTYGSYRLGVYGPGSDIDTLVVVPKHVSRDNFFQDLEPML 123

Query: 698 KQQPQVKDLRXVEXAFVPVIKMNFDGIEIDLLFXRXPXXEIXDSFDLXDXMLL 856
           +++ +V DL  V  A+VP+IK  F GI IDL+F R     +    +L D  LL
Sbjct: 124 REREEVTDLAAVPDAYVPIIKFKFLGISIDLIFARLSVPRVPRDLELSDNNLL 176


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = +2

Query: 572 NIYTFGSYRLGVHHRGADIDALCVAPRHIER---CDYFLTFYDLLKQQPQVKDLRXVEXA 742
           ++Y FGS+   ++   +D+D + ++P H  R    D F+  +  LK+     +++ +  A
Sbjct: 281 SLYVFGSFETKLYLPTSDLDLVIISPEHHYRGTKKDMFVLAHH-LKKLKLASEVQVITTA 339

Query: 743 FVPVIK 760
            VP+IK
Sbjct: 340 NVPIIK 345


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +2

Query: 575  IYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLLKQ--QPQVKDLRXVEXAFV 748
            I  FGSYR G+  + +D+D +  + +     +  L +YD +K   + +  ++  +  A +
Sbjct: 924  IACFGSYRTGLMTKNSDLDLVIYSSK-----EALLPYYDRVKSIIKNEFSNVMPIRGARI 978

Query: 749  PVIKMNFD-GIEIDLLF 796
            P+IK      I  DL F
Sbjct: 979  PIIKFTGQYNIHCDLSF 995


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 8/109 (7%)
 Frame = -3

Query: 634 CVYIGTAMMNP*SIRSKSINISTDSISDARRHVFS*RLISYPLPHQTM*STKNFHPMVHL 455
           CVY      NP  +   S  I    +SD +RH     L  YP       S     P    
Sbjct: 204 CVYRFEQKNNPSVVLGDSTLIQISRVSDLQRH-----LREYPKNCAFSRSVLEIFPDPG- 257

Query: 454 CFGLKNSKGCQRNFKIIRFF------YIDWFRP-CCRNCRG-HAQGLQI 332
               K SK CQ +FK+ R        Y+ W +P  C +C   H   LQI
Sbjct: 258 ----KTSKPCQVSFKVERLVHKELNEYLSWMQPFTCDSCGSLHENWLQI 302


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 156 LMNRNSNSTDSNFVSKENKRPQTDPTTFPP 67
           ++  N ++TD++ V KEN+    D  + PP
Sbjct: 494 IVQGNQSTTDTDDVEKENRPASNDANSMPP 523


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 707 VVALKGHKTLRNSRIFLYDEAQRT-MRLYRHRDDEPLVYKIQKYK 576
           V+ L   K+L  S   + D+  R  ++LY ++     VY++QKYK
Sbjct: 847 VLDLSSTKSLLRSLSLIEDDTVRNILQLYYYKVTPRAVYEMQKYK 891


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 278 SHTNTQPIKATNEHQNQQNLKTLGMTSAISTAGPKPIDIEKTN 406
           SH+NT P++  + +Q+ Q  K    T+ +     + +++E  N
Sbjct: 541 SHSNTDPVELRSYNQSLQQNKNNEPTAVVPLEPEQTVELETRN 583


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 22.6 bits (46), Expect(2) = 5.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 182 SPTGEHFNITPNLFSNS*DPAKMSKMWPASQYSHT 286
           +P G+   +TP+ FS+   P+    + P S    T
Sbjct: 75  TPNGDSNTLTPDTFSDPTAPSSAQSVPPTSSAETT 109



 Score = 21.8 bits (44), Expect(2) = 5.7
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 404 NDLKVSLTPFGVFESEAEMH-HRMEVLGALHRLVRQWIRDESLRKNMPPSVADT 562
           +D ++ L P   +   A+     +     + R VR+   DES  K+   S+AD+
Sbjct: 113 SDTEMKLNPIPAYSVPADTTGSSLMEFNYIQRRVRKTSFDESTAKSKKRSIADS 166


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = -1

Query: 150 NRNSNSTDSNFVSKENKRPQTDPTTFPPQRA-KSNSNLK 37
           N NS    SN   +E +  +  P   PP     SNSN K
Sbjct: 95  NENSTGFFSNLFGREKQNSEATPAVQPPATCPMSNSNQK 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,231,086
Number of Sequences: 5004
Number of extensions: 68589
Number of successful extensions: 216
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)