Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_C08
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0139 + 12247051-12247155,12247250-12247327,12247412-122475... 139 3e-33
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 136 2e-32
02_02_0143 + 7144112-7144252,7144370-7144447,7144921-7145028,714... 122 3e-28
04_04_0960 + 29704009-29705679 116 2e-26
07_03_1749 + 29201116-29201193,29201294-29201371,29201442-292015... 81 1e-15
03_02_0786 - 11169820-11170158,11170245-11170433,11171173-111714... 33 0.22
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492... 29 3.6
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661... 29 6.4
>06_02_0139 +
12247051-12247155,12247250-12247327,12247412-12247519,
12247882-12247944,12248024-12248185,12248424-12248624,
12248663-12248725,12248915-12249244,12249870-12250034,
12250110-12251078
Length = 747
Score = 139 bits (336), Expect = 3e-33
Identities = 69/172 (40%), Positives = 95/172 (55%), Gaps = 1/172 (0%)
Frame = +2
Query: 344 LGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIRDE 523
LG+T IS +GP D+ +T +++ L G++ES+ E R EVLG L ++V+ WI+
Sbjct: 11 LGVTEPISLSGPTEKDVVRTQEVEKCLADAGLYESQEEAVSREEVLGKLDQIVKAWIKKA 70
Query: 524 SLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFL-TFYDLLK 700
+ I+TFGSYRLGVH GADID LCV PRH R +YF YD+L
Sbjct: 71 TRASGFGDQFVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRTEYFFQALYDMLV 130
Query: 701 QQPQVKDLRXVEXAFVPVIKMNFDGIEIDLLFXRXPXXEIXDSFDLXDXMLL 856
P+V +L V A VPV+K +G+ IDLL+ I + DL +L
Sbjct: 131 DMPEVTELHPVPDAHVPVLKFKLNGVSIDLLYANLTHVVIPEDLDLSHDSIL 182
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 136 bits (329), Expect = 2e-32
Identities = 67/178 (37%), Positives = 102/178 (57%), Gaps = 1/178 (0%)
Frame = +2
Query: 326 QQNLKTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVR 505
+Q K G+T IS A P +D++KT +L+ L G++ES E R EVLG L ++V+
Sbjct: 14 EQPQKQYGITKPISLAEPAEVDLQKTAELEKFLVEAGLYESPEESARREEVLGELDKIVK 73
Query: 506 QWIRDESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIER-CDYFLT 682
W++ + ++ + + ++TFGSYRLGVH GADID LCV P ++ R D+F+
Sbjct: 74 DWVKQLTSQRGYTDQMVEEANAVLFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFIV 133
Query: 683 FYDLLKQQPQVKDLRXVEXAFVPVIKMNFDGIEIDLLFXRXPXXEIXDSFDLXDXMLL 856
+D+L Q +V +L+ V A VPV+K F GI IDLL+ + D+ +L
Sbjct: 134 LHDILAQTEEVTELQPVPDAHVPVMKFKFHGISIDLLYASVSLLVVPPDLDISQGSVL 191
>02_02_0143 +
7144112-7144252,7144370-7144447,7144921-7145028,
7146170-7146232,7146313-7146474,7146901-7147014,
7147093-7147155,7147268-7147600,7147679-7147843,
7147992-7148597
Length = 610
Score = 122 bits (295), Expect = 3e-28
Identities = 61/171 (35%), Positives = 96/171 (56%), Gaps = 1/171 (0%)
Frame = +2
Query: 347 GMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIRDES 526
G +S A P D+ KT +L+ L G++E E E R EVL + ++V++W++ +
Sbjct: 24 GADPPLSLAMPTVADLHKTAELEKFLVEAGLYEGEEESAKREEVLREIDQIVKEWVKKVT 83
Query: 527 LRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIER-CDYFLTFYDLLKQ 703
++K + ++TFGSYRLGVH GADIDALC+ P +++R ++F+ Y L +
Sbjct: 84 IQKGYSEQMVKEANAVLFTFGSYRLGVHGPGADIDALCIGPSYVKREEEFFVMLYGALSE 143
Query: 704 QPQVKDLRXVEXAFVPVIKMNFDGIEIDLLFXRXPXXEIXDSFDLXDXMLL 856
+V +L+ V A VPV+K F G+ IDLL+ I FD+ +L
Sbjct: 144 MEEVTELQPVPDAHVPVMKFKFRGLPIDLLYASVSLPVIPPDFDISQGSVL 194
>04_04_0960 + 29704009-29705679
Length = 556
Score = 116 bits (279), Expect = 2e-26
Identities = 65/178 (36%), Positives = 97/178 (54%), Gaps = 2/178 (1%)
Frame = +2
Query: 329 QNLKTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQ 508
Q+ ++ G+ IS GP P D+E T L+ L G++ES E R EVL L +V +
Sbjct: 4 QSPQSRGVAEPISLVGPTPADLESTARLERLLREEGLYESAEETAAREEVLRGLRGVVDR 63
Query: 509 WIRDESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERC--DYFLT 682
W++ + ++ P +AD + FGSYRLGVH RG+DIDAL V P +++ C D+F
Sbjct: 64 WVKRLTRQRGYPDGMADRATALVLPFGSYRLGVHGRGSDIDALVVGPSYVD-CDRDFFGA 122
Query: 683 FYDLLKQQPQVKDLRXVEXAFVPVIKMNFDGIEIDLLFXRXPXXEIXDSFDLXDXMLL 856
L + V +L+ V A VPVIKM F G+++DL++ + DL +L
Sbjct: 123 LATALAETAAVAELQPVPGAHVPVIKMRFHGVQVDLVYAGVCLPVVPGDLDLSGRSVL 180
>07_03_1749 +
29201116-29201193,29201294-29201371,29201442-29201540,
29202958-29203020,29203101-29203298,29203359-29203472,
29203744-29203806,29203912-29204208,29204774-29204935,
29205061-29205244,29205771-29205820
Length = 461
Score = 80.6 bits (190), Expect = 1e-15
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 1/149 (0%)
Frame = +2
Query: 386 IDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIRDESLRKNMPPSVADTV 565
+D +T L L G S R +V+ L+++V W + + + +PP A
Sbjct: 16 MDSRRTTSLLQFLKDEGGIPSPEADKKREQVIRKLNKIVMDWAKVVAYEQRVPPRRATAT 75
Query: 566 GGNIYTFGSYRLGVHHRGADIDALCVAPRHIE-RCDYFLTFYDLLKQQPQVKDLRXVEXA 742
+ T+GSY LG H +DIDALCV P + +F+ +L+ +P+V +L+ VE A
Sbjct: 76 ---VLTYGSYTLGAHGPESDIDALCVGPCIATLQYHFFIVLRQILEDRPEVSELQTVESA 132
Query: 743 FVPVIKMNFDGIEIDLLFXRXPXXEIXDS 829
VP+++ F GI +D + + P + ++
Sbjct: 133 KVPLMRFRFSGISVDFTYAQLPVIDASEA 161
>03_02_0786 -
11169820-11170158,11170245-11170433,11171173-11171469,
11171568-11171630,11171884-11171997,11173011-11173091,
11173176-11173307,11174265-11174363,11174453-11174530,
11174641-11174901
Length = 550
Score = 33.5 bits (73), Expect = 0.22
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 620 ADIDALCVAPRHIE-RCDYFLTFYDLLKQQPQVKDLRXVEXA 742
+DIDA+CV P + +F+ +L+++P+V DL +E A
Sbjct: 175 SDIDAVCVGPCIASLQHHFFIVLRQMLEERPEVSDLHSIENA 216
>07_03_1552 -
27648193-27648307,27648384-27648431,27649140-27649234,
27649311-27649376,27649721-27649810,27650210-27650437,
27650572-27650605,27651106-27651611
Length = 393
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 70 WKRCWIRLRPFVLFGYKIRVSAVAVSV 150
W CW RL P L GY+ A AV++
Sbjct: 125 WVPCWARLHPGWLLGYRAFALAAAVAL 151
>03_02_0232 +
6614784-6614882,6616145-6616477,6616708-6616967,
6617328-6617469,6617567-6617938,6618056-6618187,
6618907-6619035,6619125-6621188
Length = 1176
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +2
Query: 557 DTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLLKQQPQVKDLRXVE 736
D GG+ + S RL + RG C CD + F+ L ++ ++ LR E
Sbjct: 162 DACGGSGRGWISQRLASYSRGYGTRETCALHTARLSCDTLVDFWSALSEETRLSLLRMKE 221
Query: 737 XAFVPVIKMNFD 772
F+ + F+
Sbjct: 222 EDFMERLMRRFE 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,601,850
Number of Sequences: 37544
Number of extensions: 431913
Number of successful extensions: 1082
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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