Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C08
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.30 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 254  KMWPASQYSHT-NTQPIKATNEHQNQQNLKTLGMTSAISTAGPKPIDIE 397
            K  P+S  S     Q +K    +Q QQ+++T GM   I+  G KPI ++
Sbjct: 1050 KQSPSSNQSQQIQQQQLKRVVTNQ-QQSIQTSGMQRIIAQIGGKPIAVQ 1097


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
 Frame = +2

Query: 290 TQPIKATNEHQNQQNLKTLGMTSAISTAGPKPIDI------EKTNDLKVSL-TPFGVFES 448
           TQPIK      N++   T+ +  AIS A   PI +      ++T D  +   T F ++ S
Sbjct: 289 TQPIKYAKHKNNRRVWLTILLVWAISAAIGSPIVLGLNNTPDRTPDQCLFYNTDFIIYSS 348

Query: 449 EAEMHHRMEVLGALHRLVRQWIRDES--LRKNMPPSVADTVGGNI 577
            +  +    ++  L+  + + +R+ +   R N  P++ D   G+I
Sbjct: 349 LSSFYIPCIIMVFLYYNIFKALRNRARKARANRKPNLGDIKPGSI 393


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 294 WVFV*EYWDAGHIFDILAGSQLLLNKLGVML 202
           WVF   + D    FD++  +  +LN   + L
Sbjct: 91  WVFGPRFCDTWIAFDVMCSTASILNLCAISL 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,037
Number of Sequences: 438
Number of extensions: 4640
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)