Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C07
         (930 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2F502 Cluster: Formin Homology 2 Domain containing pro...    38   0.48 
UniRef50_Q7SFA3 Cluster: Predicted protein; n=1; Neurospora cras...    37   0.85 
UniRef50_Q4A2S6 Cluster: Putative membrane protein precursor; n=...    35   2.6  
UniRef50_Q20327 Cluster: Ground-like (Grd related) protein 4; n=...    34   4.5  
UniRef50_Q06KK2 Cluster: Putative uncharacterized protein; n=2; ...    33   7.9  

>UniRef50_A2F502 Cluster: Formin Homology 2 Domain containing
           protein; n=2; Trichomonas vaginalis G3|Rep: Formin
           Homology 2 Domain containing protein - Trichomonas
           vaginalis G3
          Length = 1139

 Score = 37.5 bits (83), Expect = 0.48
 Identities = 34/128 (26%), Positives = 34/128 (26%)
 Frame = +3

Query: 471 PXXVSXPXXXXPPVXXLGXXVSXPXXGXXXFXPXXGXXPXKXFXPKGXQRARNPXKGPXL 650
           P   S      PP       V  P  G     P     P     P G      P   P  
Sbjct: 554 PPGASLVPPPPPPPPGAPGLVPSPPPGAAGLVPPPPPPP-----PPGASLVPPPPPPPPG 608

Query: 651 LAFFQKXPPPXKXXXKNXAPXFXRXXXPXXGF*KXPXXXPXEXPPLXPPXFXPPXPVXXG 830
            A     PPP         P       P  G    P   P   PP   P   PP P   G
Sbjct: 609 AAGLVPPPPPPPPGAGGIPPP---PPPPGAGIPPPPPGVPGIPPPPGAPGLPPPPPGVPG 665

Query: 831 IPXPPFFP 854
           IP PP  P
Sbjct: 666 IPPPPGAP 673


>UniRef50_Q7SFA3 Cluster: Predicted protein; n=1; Neurospora
           crassa|Rep: Predicted protein - Neurospora crassa
          Length = 1109

 Score = 36.7 bits (81), Expect = 0.85
 Identities = 35/146 (23%), Positives = 42/146 (28%)
 Frame = +1

Query: 469 GPXPFPXPXXPXPRSXGWGXXFXXPQXGXSXXPQXRGXXXXKXFXQRAXKGPETP*KGPX 648
           GP     P  P PR+   G     P  G    P  +G         +    P TP +GP 
Sbjct: 359 GPPTHGLPHPPAPRTGAPGPRGPGPHPGPHPGPPRQGPPYRGPMPHQGPPHPGTPNRGP- 417

Query: 649 CWLFSKRXPPPXXTXQKIXPXXFXGXXXPXXDFKNXXXFXPXKXPLXGPPXFXHPXPFXX 828
                ++ PPP     +  P        P               P  GPP    P P   
Sbjct: 418 ----PRQGPPPHGISPQGTPRQGSPHQGPPRHGSPHGAPYRGTPPPHGPP--RGPLPHGP 471

Query: 829 EYLXPXFSPFGXXGGPXXLXPPPXXG 906
               P  SP G   GP     P   G
Sbjct: 472 HQSGPHSSPHGTPHGPPGPLRPGLRG 497


>UniRef50_Q4A2S6 Cluster: Putative membrane protein precursor; n=1;
           Emiliania huxleyi virus 86|Rep: Putative membrane
           protein precursor - Emiliania huxleyi virus 86
          Length = 430

 Score = 35.1 bits (77), Expect = 2.6
 Identities = 16/39 (41%), Positives = 16/39 (41%)
 Frame = +3

Query: 780 PPLXPPXFXPPXPVXXGIPXPPFFPXWXXXWAXXXXXPP 896
           PPL PP   PP P     P PP  P W   W      PP
Sbjct: 41  PPLSPPPSLPPPPPSPPPPSPPSLPPW---WPNVSPSPP 76


>UniRef50_Q20327 Cluster: Ground-like (Grd related) protein 4; n=2;
           Caenorhabditis|Rep: Ground-like (Grd related) protein 4
           - Caenorhabditis elegans
          Length = 210

 Score = 34.3 bits (75), Expect = 4.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 756 PXXXPXEXPPLXPPXFXPPXPVXXGIPXPP 845
           P   P   PP+ PP F PP P+    P PP
Sbjct: 40  PPPLPCPPPPICPPQFCPPPPMCPPPPPPP 69


>UniRef50_Q06KK2 Cluster: Putative uncharacterized protein; n=2;
           Nucleopolyhedrovirus|Rep: Putative uncharacterized
           protein - Anticarsia gemmatalis nuclear polyhedrosis
           virus (AgMNPV)
          Length = 886

 Score = 33.5 bits (73), Expect = 7.9
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 741 GF*KXPXXXPXEXPPLXPPXFXPPXPVXXGIPXPPFFP 854
           G  + P   P + PP  PP   PP P     P PPF P
Sbjct: 114 GLKQPPPQPPFQPPPPQPPFQPPPQPPFQPPPQPPFQP 151


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 383,087,025
Number of Sequences: 1657284
Number of extensions: 4447980
Number of successful extensions: 16559
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13624
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 85670899699
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)