Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C07
         (930 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    34   0.13 
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    30   2.7  
AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical ...    30   2.7  
Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical pr...    29   6.3  

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 756 PXXXPXEXPPLXPPXFXPPXPVXXGIPXPP 845
           P   P   PP+ PP F PP P+    P PP
Sbjct: 40  PPPLPCPPPPICPPQFCPPPPMCPPPPPPP 69


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +3

Query: 780 PPLXPPXFXPPXPVXXGIPXPP 845
           PP  P  F PP P   GIP PP
Sbjct: 66  PPPVPNGFIPPPPGPGGIPPPP 87


>AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical
           protein F56E10.2 protein.
          Length = 813

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 756 PXXXPXEXPPLXPPXFXPPXPVXXGIPXPP 845
           P   P   PP+ PP   PP P   G+  PP
Sbjct: 316 PCPSPPLLPPVCPPAPPPPPPPIGGLTSPP 345


>Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical
           protein C36H8.1 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 780 PPLXPPXFXPPXPVXXGIPXPPFFP 854
           PP  PP   PP PV    P PP  P
Sbjct: 178 PPPRPPPQEPPKPVEQAAPPPPPAP 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,562,025
Number of Sequences: 27780
Number of extensions: 118300
Number of successful extensions: 393
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)