Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C06
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   101   1e-22
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   100   3e-22
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   3.7  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  101 bits (242), Expect = 1e-22
 Identities = 44/79 (55%), Positives = 53/79 (67%)
 Frame = +1

Query: 100 QASSKRRNKTHTLXRRCGRSSYHIQKSKCAXCGYPAAKLRSYHWSVKAXXXXXXXXXXMR 279
           Q+   R NK+HT+ RRCG+ S+HIQKS CA CGYPAAK RSY+W  KA          M 
Sbjct: 6   QSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMS 65

Query: 280 HLKIVRRRFRNGFKEGKPT 336
           +LK V R F+NGF+ GKPT
Sbjct: 66  YLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  100 bits (239), Expect = 3e-22
 Identities = 45/86 (52%), Positives = 54/86 (62%)
 Frame = +1

Query: 100 QASSKRRNKTHTLXRRCGRSSYHIQKSKCAXCGYPAAKLRSYHWSVKAXXXXXXXXXXMR 279
           Q+   R NK+HT+ RRCG+ S+HIQKS CA CGYPAAK RSY+W  KA          M 
Sbjct: 6   QSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMS 65

Query: 280 HLKIVRRRFRNGFKEGKPTPPKKAVA 357
           +LK V R F+NGF+ GKP     A A
Sbjct: 66  YLKKVHRSFKNGFRSGKPAAAVAASA 91


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 293 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPXWAHF 180
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,747
Number of Sequences: 5004
Number of extensions: 29798
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)