Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C04
         (994 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.61 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   9.9  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   9.9  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   9.9  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   9.9  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   9.9  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   9.9  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   9.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.61
 Identities = 12/41 (29%), Positives = 14/41 (34%)
 Frame = +1

Query: 760 PXRXRPXXXXAPPXRRXPPXPGGXXXPAPXPPPHXPXRXPP 882
           P    P    +P      P  G    P+  PPP  P   PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 12/42 (28%), Positives = 14/42 (33%)
 Frame = +1

Query: 733 GPPXXPPSXPXRXRPXXXXAPPXRRXPPXPGGXXXPAPXPPP 858
           G P   PS     +     +PP     P PGG     P   P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.5
 Identities = 12/32 (37%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
 Frame = +1

Query: 664 SPVXXPXXAXHGXPXXXXT-PXXXGPPXXPPS 756
           SP   P     G P      P   GPP  PPS
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 790  APPXRRXPPXPG 825
            APP R+ PP PG
Sbjct: 1647 APPNRKLPPVPG 1658


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +1

Query: 571 PPAPXGSXXAXXRPTQGARXXGXSPXXPRXXSP 669
           PP P GS  +        R  G S   PR   P
Sbjct: 124 PPRPMGSWISIQEQIPRFRHIGPSTPFPRFIPP 156


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +1

Query: 571 PPAPXGSXXAXXRPTQGARXXGXSPXXPRXXSP 669
           PP P GS  +        R  G S   PR   P
Sbjct: 124 PPRPMGSWISIQEQIPRFRHIGPSTPFPRFIPP 156


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +1

Query: 571 PPAPXGSXXAXXRPTQGARXXGXSPXXPRXXSP 669
           PP P GS  +        R  G S   PR   P
Sbjct: 124 PPRPMGSWISIQEQIPRFRHIGPSTPFPRFIPP 156


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +1

Query: 571 PPAPXGSXXAXXRPTQGARXXGXSPXXPRXXSP 669
           PP P GS  +        R  G S   PR   P
Sbjct: 124 PPRPMGSWISIQEQIPRFRHIGPSTPFPRFIPP 156


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +1

Query: 571 PPAPXGSXXAXXRPTQGARXXGXSPXXPRXXSP 669
           PP P GS  +        R  G S   PR   P
Sbjct: 124 PPRPMGSWISIQEQIPRFRHIGPSTLFPRFIPP 156


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +1

Query: 571 PPAPXGSXXAXXRPTQGARXXGXSPXXPRXXSP 669
           PP P GS  +        R  G S   PR   P
Sbjct: 124 PPRPMGSWISIQEQIPRFRHIGPSTPFPRFIPP 156


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +1

Query: 571 PPAPXGSXXAXXRPTQGARXXGXSPXXPRXXSP 669
           PP P G   +        R  G S   PR  SP
Sbjct: 132 PPRPMGPWISIQEQIPRFRHIGPSTPFPRFISP 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,901
Number of Sequences: 438
Number of extensions: 4476
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32895408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)