Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_C03
         (987 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.44 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   1.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 20/59 (33%), Positives = 22/59 (37%)
 Frame = +1

Query: 166 SPXXXXPPXPPXPPXXGAXGPPXXRXSRXXAPPXXRGAXXPXAXFXXPSXXXPPXXPPP 342
           +P    P  PP  P  GA   P    S   APP   G   P A    P+   PP  P P
Sbjct: 427 APPSLPPSAPPSLPM-GAPAAPPLPPSAPIAPPLPAG--MPAAPPLPPAAPAPPPAPAP 482



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 19/68 (27%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
 Frame = +1

Query: 184 PPXPPXPPXXGAXGPPXXRXSRXXA---PPXXRGAXXPXAXFXXPSXXXPPXXPPP--TX 348
           PP PP P       PP    S   +   PP    +    +    P     P  PPP    
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370

Query: 349 SLXRLPAP 372
           S  R P P
Sbjct: 371 STGRQPPP 378


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 23/82 (28%), Positives = 26/82 (31%)
 Frame = +1

Query: 169 PXXXXPPXPPXPPXXGAXGPPXXRXSRXXAPPXXRGAXXPXAXFXXPSXXXPPXXPPPTX 348
           P    PP  P PP  GA G P    S+   PP              P    PP  P P  
Sbjct: 495 PTTFAPPGVPLPPIPGAPGMPNLNMSQ---PP-----------MVPPGMALPPGMPAPFP 540

Query: 349 SLXRLPAPGXXXXXXSXPGGGG 414
               +PA        + PG  G
Sbjct: 541 GYPAVPAMPGIPGATAPPGAPG 562


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 23/70 (32%), Positives = 26/70 (37%)
 Frame = +1

Query: 193  PPXPPXXGAXGPPXXRXSRXXAPPXXRGAXXPXAXFXXPSXXXPPXXPPPTXSLXRLPAP 372
            PP PP   A  PP  + S    PP    +  P      PS   PP  P PT     +PAP
Sbjct: 1189 PPVPPPSEA--PPVPKPS-VGVPPVPPPSTAPPV--PTPSAGLPP-VPVPTAKAPPVPAP 1242

Query: 373  GXXXXXXSXP 402
                   S P
Sbjct: 1243 SSEAPSVSTP 1252



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 22/86 (25%), Positives = 23/86 (26%)
 Frame = -2

Query: 620  PXPXGRARGXPRXPGXPPXTXPGGGEXRAPAXERXPPAXRXXXXXXXXXXGXAPXXGAKE 441
            P P   A   P   G PP   P       PA    PP  +            AP  G   
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPK---PSVAAPPVPAPSSGIPP 1180

Query: 440  XNXPXXXXXPPPPGXEXXXKXXPGAG 363
               P     P PP  E      P  G
Sbjct: 1181 VPKPAAGVPPVPPPSEAPPVPKPSVG 1206



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
 Frame = +1

Query: 193  PPXPPXXGAXGPPXXRXSRXXAP-PXXRGAXX-PXAXFXXPSXXXPPXXPP---PTXSLX 357
            PP P   GA  PP  + S    P P   GA   P      P    P   PP   P+ +  
Sbjct: 1112 PPVPAPSGA--PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP 1169

Query: 358  RLPAPGXXXXXXSXPGGG 411
             +PAP         P  G
Sbjct: 1170 PVPAPSSGIPPVPKPAAG 1187



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
 Frame = +1

Query: 166  SPXXXXPPXP------PXPPXXGAXGPPXXRXSRXXAPPXXRGAXX-PXAXFXXPSXXXP 324
            +P    PP P      P  P   A  PP    S     P        P +    PS   P
Sbjct: 1006 APLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSA--P 1063

Query: 325  PXXPPPTXSLXRLPAP 372
            P  P P+  +  +PAP
Sbjct: 1064 PPVPAPSSEIPSIPAP 1079



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/52 (25%), Positives = 17/52 (32%)
 Frame = +2

Query: 566  PXGPPGXGXXPGPSPXAXAXLXXPXXXXGAAPLFRXFPXXPPPPLXGXPXPA 721
            P   P     P P+P     +  P       P+    P  P P +   P PA
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPA 1154


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 166 SPXXXXPPXPPXPPXXGAXGPP 231
           +P    PP PP PP     GPP
Sbjct: 755 APIMGGPPPPPPPPGVAGAGPP 776



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = -2

Query: 620 PXPXGRA-RGXPRXPGXPPXTXPGGGEXRAPAXERXP 513
           P P G A  G P  P  PP    GG    APA +  P
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 830 VXPXXPRLAGPXXXPPPXXXXGXRGXPP 913
           V P  P + GP   PPP    G    PP
Sbjct: 751 VPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -3

Query: 562 PPPEXGXXGPPPXNGXPPRXGGG 494
           PPP     GPPP    PP    G
Sbjct: 766 PPPGVAGAGPPPPPPPPPAVSAG 788


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 635  PXXXXGAAPLFRXFPXXPPPPLXGXPXPARGP 730
            P     AAP     P  PPPP+   P P+  P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 26/87 (29%), Positives = 28/87 (32%)
 Frame = -1

Query: 429 GXARXTPPPGXGXPXXTXPXGGQPXKXGGXGRXXGRGGPXWXXKXRXXPXRXPGXXRSXP 250
           G     PPPG G        GG+    GG G     GGP             PG      
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFG--GGPGGFEGGPGGFGGGPGGF---- 247

Query: 249 PGXPXGGXPXXPXXWGGXGXRGXGXXG 169
            G   GG    P  +GG G  G G  G
Sbjct: 248 -GGGLGGFGGGPGGFGG-GPGGHGGPG 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.146    0.508 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,773,751
Number of Sequences: 5004
Number of extensions: 21873
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)