Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_C02
(866 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 85 2e-17
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 75 2e-14
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 60 5e-10
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 39 0.001
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 32 0.12
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 29 1.1
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 27 3.5
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 27 3.5
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 27 4.6
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 26 8.0
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 84.6 bits (200), Expect = 2e-17
Identities = 41/108 (37%), Positives = 54/108 (50%)
Frame = +2
Query: 329 KGFKLNIWDVGGQKSLRSYWKNYFESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXXX 508
+G + IWD+GGQK+LR++WKNYFEST RL C
Sbjct: 58 EGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLF 117
Query: 509 XXXXXXXNKCDLPGALSLXQIREALDLDSIKSHHWRIVRCSAVTGENL 652
NK D+ GALS +I + L++ KS HWRI SA+TG N+
Sbjct: 118 TSILVLANKSDVSGALSSEEISKILNISKYKSSHWRIFSVSALTGLNI 165
Score = 75.4 bits (177), Expect = 1e-14
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = +1
Query: 157 MGFLTILKKLRQKEKEMRILMLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLE 324
MG LTIL++ + KE+E+R+L+LGLDNAGKTTILK E ++ +SPT GF I+TLE
Sbjct: 1 MGLLTILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLE 56
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 74.5 bits (175), Expect = 2e-14
Identities = 38/111 (34%), Positives = 49/111 (44%)
Frame = +2
Query: 326 HKGFKLNIWDVGGQKSLRSYWKNYFESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXX 505
+K K N+WDVGGQ +R W++YF T R+S
Sbjct: 62 YKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMR 121
Query: 506 XXXXXXXXNKCDLPGALSLXQIREALDLDSIKSHHWRIVRCSAVTGENLLE 658
NK DLPGALS QI + L LD +K W + A+TG+ LLE
Sbjct: 122 DCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLE 172
Score = 49.6 bits (113), Expect = 6e-07
Identities = 26/42 (61%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
Frame = +1
Query: 199 KEMRILMLGLDNAGKTTILKRFN-GEPIDTISPTLGFNIKTL 321
KEMRILMLGLD AGKTTIL + + + TI PT+GFN++T+
Sbjct: 20 KEMRILMLGLDAAGKTTILYKLKLNQSVVTI-PTVGFNVETV 60
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 59.7 bits (138), Expect = 5e-10
Identities = 29/112 (25%), Positives = 47/112 (41%)
Frame = +2
Query: 323 KHKGFKLNIWDVGGQKSLRSYWKNYFESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXX 502
+++ +WDVGGQ +R W++YF++T R+S
Sbjct: 57 EYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDEL 116
Query: 503 XXXXXXXXXNKCDLPGALSLXQIREALDLDSIKSHHWRIVRCSAVTGENLLE 658
NK DLP A++ +I + L L S++ W I A +G+ L E
Sbjct: 117 RDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYE 168
Score = 53.6 bits (123), Expect = 3e-08
Identities = 27/44 (61%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Frame = +1
Query: 196 EKEMRILMLGLDNAGKTTILKRFN-GEPIDTISPTLGFNIKTLE 324
++EMRILM+GLD AGKTTIL + GE + TI PT+GFN++T+E
Sbjct: 15 KREMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVE 57
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +1
Query: 163 FLTILKKLRQKEKEMRILMLGLDNAGKTTILKRFNGEPIDTISPTL 300
F L L K ++L LGLDNAGKTT+L + + + PTL
Sbjct: 7 FYDALAMLGLVNKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTL 52
Score = 34.7 bits (76), Expect = 0.017
Identities = 20/84 (23%), Positives = 30/84 (35%)
Frame = +2
Query: 338 KLNIWDVGGQKSLRSYWKNYFESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXXXXXX 517
+ +D+GG + R W++YF RLS
Sbjct: 65 RFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPF 124
Query: 518 XXXXNKCDLPGALSLXQIREALDL 589
NK D PGA+S +++ AL L
Sbjct: 125 LILGNKIDAPGAISEDELKAALGL 148
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 31.9 bits (69), Expect = 0.12
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 323 KHKGFKLNIWDVGGQKSLRSYWKNYF 400
+ K KL IWD GQ+ RS +NY+
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYY 83
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 181 KLRQKEKEMRILMLGLDNAGKTTILKRFNGEPID 282
++ QKEKE+ + L +++ KTT+L N E D
Sbjct: 258 EMLQKEKEVSLYKLSINHNNKTTLLAVHNSEERD 291
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/20 (45%), Positives = 18/20 (90%)
Frame = +1
Query: 202 EMRILMLGLDNAGKTTILKR 261
++++L+LG ++GKTTI+K+
Sbjct: 74 DIKVLLLGAGDSGKTTIMKQ 93
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 329 KGFKLNIWDVGGQKSLRSYWKNYF 400
K KL IWD GQ+ R+ +Y+
Sbjct: 55 KTVKLQIWDTAGQERFRTITSSYY 78
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 199 KEMRILMLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLE 324
K + + +LG NAGK++++ I +SP G +E
Sbjct: 238 KGINVAILGPSNAGKSSLINLLANRRISIVSPQSGTTRDAIE 279
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 329 KGFKLNIWDVGGQKSLRSYWKNYF 400
K KL IWD GQ+ R+ Y+
Sbjct: 56 KRIKLQIWDTAGQERFRTITTAYY 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,326
Number of Sequences: 5004
Number of extensions: 42501
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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