Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_B24
(971 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.14
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.43
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.0
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.0
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 26 7.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 9.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.14
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = +3
Query: 762 PPPXPRPQXRXPXXGRXXPPXHPXXRGGPPXPXXXPPPRTXSXXXXHPXPXXPP 923
PPP P P P GGPP P PPP + P P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP---PPPPGVAGAGPPPPPPPPP 783
Score = 31.9 bits (69), Expect = 0.14
Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Frame = +3
Query: 729 PPFXXXXAXXXPPPXPRPQXRXPXXGRXXPPXHPXXRGGPPXPXXXPPPRTXSXXXXH-- 902
PP P P P P G PP P G P P PPP + +
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYA 794
Query: 903 PXPXXPP 923
P P P
Sbjct: 795 PAPQAEP 801
Score = 26.2 bits (55), Expect = 7.0
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +3
Query: 849 PXPXXXPPPRTXSXXXXHPXPXXPPXGXXXXXXXPPP 959
P P PPP + P P PP G PPP
Sbjct: 746 PAPIPVPPP---APIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 25.8 bits (54), Expect = 9.2
Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Frame = +3
Query: 693 IPTPXXXXXXXXPPFXXXXAXXXPPPXPRPQXRXPXXGRXXPP--XHPXXRGGPPXPXXX 866
+PTP PP PPP P P PP R P P
Sbjct: 741 VPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAE 800
Query: 867 PPPR 878
P P+
Sbjct: 801 PEPK 804
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.43
Identities = 24/83 (28%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Frame = +3
Query: 696 PTPXXXXXXXXPPFXXXXAXXX-PPPXPRPQXRX------PXXGRXXPPXHPXXRGGPPX 854
P P PP + PPP P P+ P GR PP P P
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSA--PS 371
Query: 855 PXXXPPPRTXSXXXXHPXPXXPP 923
PPP + S +P P PP
Sbjct: 372 TGRQPPPLSSSRAVSNP-PAPPP 393
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Frame = +3
Query: 750 AXXXPPPXP--RPQXRXPXXGRXXPPXHPXXRGGPPXPXXXPPPRTXSXXXXHP 905
A PP P RP R P PP P G PPR + +P
Sbjct: 229 APPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282
Score = 25.8 bits (54), Expect = 9.2
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Frame = +3
Query: 846 PPXPXXXPPPRTXSXXXXHPXPXXPP-XGXXXXXXXPPPR 962
P P PP R S P P PP G PPR
Sbjct: 234 PSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPR 273
Score = 25.8 bits (54), Expect = 9.2
Identities = 21/82 (25%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Frame = +3
Query: 729 PPFXXXXAXXXPPPXPRPQXRXPXXGRXXPPXHPXXRGGPPXPXXXP--PPRTXSXXXXH 902
PP A PP P P PP P PP P P PP +
Sbjct: 420 PPSLPPSAPPSLPPSAPPSL--PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Query: 903 PXPXXPPXGXXXXXXXPPPRTG 968
P P P P + G
Sbjct: 478 PAPAPAPAAPVASIAELPQQDG 499
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +3
Query: 762 PPPXPRPQXRXPXXGRXXPPXHPXXRGGPPXPXXXPPPRTXSXXXXHPXP 911
PP P P PP P GP P PPP S P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGP--PSAPPPPLPASSAPSVPNP 1746
Score = 26.6 bits (56), Expect = 5.3
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 816 PPXHPXXRGGPPXPXXXPPPRTXSXXXXHPXPXXPPXGXXXXXXXPPP 959
PP P P PPP S P P PP PPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVP---PPPSAPPMPAGPPSAPPPP 1734
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 4.0
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = -2
Query: 922 GGXXGXGCXXXXEXVRGGGXXXGXGGPPRXXGWXGGXXRPXXGXRXWGRGXGGG 761
GG G G GGG GGP G GG G G GGG
Sbjct: 211 GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
Score = 25.8 bits (54), Expect = 9.2
Identities = 22/66 (33%), Positives = 22/66 (33%)
Frame = -2
Query: 958 GGGXXXXXXXPXGGXXGXGCXXXXEXVRGGGXXXGXGGPPRXXGWXGGXXRPXXGXRXWG 779
GGG P GG G G E GG GGP G GG G
Sbjct: 194 GGGSGGPPPGP-GGFGGFG-GFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL 251
Query: 778 RGXGGG 761
G GGG
Sbjct: 252 GGFGGG 257
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 26.2 bits (55), Expect = 7.0
Identities = 14/54 (25%), Positives = 15/54 (27%)
Frame = +3
Query: 762 PPPXPRPQXRXPXXGRXXPPXHPXXRGGPPXPXXXPPPRTXSXXXXHPXPXXPP 923
PPP P Q P PP PP PP + P P
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPVQAYPQAPQQPIVVAQP 259
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 9.2
Identities = 17/67 (25%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Frame = +3
Query: 765 PPXPRPQXRXPXXGRXXPP-XHPXXRGGPPXPXXXPP-PRTXSXXXXHPXPXXPPXGXXX 938
PP P+ + R P P P PP P PP P + P P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189
Query: 939 XXXXPPP 959
PP
Sbjct: 190 LPSAVPP 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,918,232
Number of Sequences: 5004
Number of extensions: 21573
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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