Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_B23
         (972 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    34   0.026
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   0.75 
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   5.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.0  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   9.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 34.3 bits (75), Expect = 0.026
 Identities = 28/76 (36%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
 Frame = -2

Query: 755 GGGSPPPXXXA-XGFXGXPGXG---------GGGPXGXXPXQGRPXXXVXGPXAXPWGTX 606
           G G PPP      GF G  G G         GGGP G    +G P     GP     G  
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG---FEGGPGGFGGGPGGFGGGLG 252

Query: 605 GFSPGXPPXXPGGXPG 558
           GF  G  P   GG PG
Sbjct: 253 GFGGG--PGGFGGGPG 266



 Score = 30.7 bits (66), Expect = 0.32
 Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
 Frame = -2

Query: 788 GXXPXGXXKXPGGGSPPPXXXAXG---FXGXPGXGGGGPXG 675
           G  P G    PGG    P     G   F G PG  GGGP G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 18/54 (33%), Positives = 18/54 (33%)
 Frame = -2

Query: 719 GFXGXPGXGGGGPXGXXPXQGRPXXXVXGPXAXPWGTXGFSPGXPPXXPGGXPG 558
           GF G  G  GG P G     G       G      G  G  PG     PGG  G
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG 242



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = -2

Query: 719 GFXGXPGXGGGGPXGXXPXQGRPXXXVXGPXAXPWGTXG 603
           GF G PG  GGGP G     G       G    P G  G
Sbjct: 232 GFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 676 PXGPPPPXPGXPXXPXAXXXGGGDPPPG 759
           P G P P PG P  P      G   PPG
Sbjct: 532 PPGMPAPFPGYPAVPAMPGIPGATAPPG 559



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = +1

Query: 634 PXTXXXGRPWXGXXPXGPPPPXPGXPXXPXAXXXGGGDPPPGXXXXPXGXSP 789
           P T     P     P  P PP PG P  P          PPG    P   +P
Sbjct: 487 PGTSAPLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAP 538


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -1

Query: 744 PPPXXXGGXXXGXPGXGGRGPXG 676
           PPP   GG   G  G  G GP G
Sbjct: 77  PPPGAEGGPGAGFGGFPGAGPGG 99


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
 Frame = +1

Query: 658 PWXGXXPXGPPPPXP---GXPXXPXAXXXGGGDPPPGXXXXP 774
           P     P   PPP P   G P  P      G  PPP     P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -1

Query: 750 GVPPPXXXGGXXXGXPGXGGRGPXGXXPXPGAP 652
           G+P     GG   G PG   RGP    P  G P
Sbjct: 515 GMPTQFPAGGPAPGYPGMNARGP---VPAQGRP 544


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,718,670
Number of Sequences: 5004
Number of extensions: 22328
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)