Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_B22
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.30 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.40 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +3

Query: 615 PXXXPGKXPFXNPLXPXGXPNPKXPPGGXVFXXXXPPPP 731
           P   P   P   P    G P P  PP G       PPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = +3

Query: 579 PPKRXXXGXPPKPXXXPGKXPFXNPLXPXGXPNPKXPPGGXVFXXXXPPPP 731
           PP        P P   P   P   P+   G P P  PPG        PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIM-GGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 240 PXXGGXGXPPPXKXXXXXGXPPXPP 314
           P  GG   PPP       G PP PP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = +1

Query: 721  PPPPGPX*KKXPPXFWXGXPPEXXKKKKRXPPXXXPPGAPPLXFP 855
            PP P P     P     G PP   K     PP   P GAPP+  P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPP-VPKPSVAAPPVPAPSGAPPVPKP 1164



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = +1

Query: 721  PPPPGPX*KKXPPXFWXGXPPEXXKKKKRXPPXXXPPGAPPLXFP 855
            PP P P     P     G PP   K     PP   P GAPP+  P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPP-VPKPSVAAPPVPVPSGAPPVPKP 1145



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = +1

Query: 721  PPPPGPX*KKXP-PXFWXGXPPEXXKKKKRXPPXXXPPGAPPLXFPXXG 864
            PP P P     P P    G PP   K     PP   P  APP+  P  G
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPP-VPKPAAGVPPVPPPSEAPPVPKPSVG 1206



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/48 (33%), Positives = 17/48 (35%)
 Frame = +1

Query: 721  PPPPGPX*KKXPPXFWXGXPPEXXKKKKRXPPXXXPPGAPPLXFPXXG 864
            PP P P     PP       P   K     PP   P  APP+  P  G
Sbjct: 1179 PPVPKPA-AGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 654 LXPXGXPNPKXPPGGXVFXXXXPPPPGAXLKK 749
           L P   P P  PPG        PPPP   +KK
Sbjct: 4   LPPGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/59 (27%), Positives = 17/59 (28%)
 Frame = +3

Query: 585 KRXXXGXPPKPXXXPGKXPFXNPLXPXGXPNPKXPPGGXVFXXXXPPPPGAXLKKXXPP 761
           K+     PP      GK P  N       P P  PP          PP G       PP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,152
Number of Sequences: 5004
Number of extensions: 25813
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)