Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_B21
(963 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 35 0.015
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.74
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.7
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 27 3.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.0
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 6.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 9.1
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 9.1
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.1 bits (77), Expect = 0.015
Identities = 29/103 (28%), Positives = 30/103 (29%), Gaps = 4/103 (3%)
Frame = +2
Query: 458 PFPXPWXQXPQXPGXGXRXNPXXXREGAXPQTPGEXXXXPXXNPXGPPXCXKPSXPXXXP 637
P P P P P P GA P P P G P KPS P
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPS--VAAP 1150
Query: 638 GLNPIXXXPPXPKPKKTKXXXXRXP---PPTP-PQKXXPXSPP 754
+ PP PKP PP P P P PP
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193
Score = 29.5 bits (63), Expect = 0.74
Identities = 30/118 (25%), Positives = 36/118 (30%), Gaps = 4/118 (3%)
Frame = +2
Query: 413 RXPPGXXXNALGPFRPFPXPWXQXPQXPGXGXRXNPXXXREGAXPQTPGEXXXXPXXNPX 592
R PP ++ P P P P P P P + P P P P
Sbjct: 1010 RVPPVPKLSSKAP--PVPLPSADAPPIPVPSTA--PPVPIPTSTPPVPKSSSGAPSAPPP 1065
Query: 593 GP-PXCXKPSXPXXXPGLNPIXXX---PPXPKPKKTKXXXXRXPPPTPPQKXXPXSPP 754
P P PS P G P+ PP PKP + PP +PP
Sbjct: 1066 VPAPSSEIPSIPAPS-GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Score = 26.6 bits (56), Expect = 5.2
Identities = 27/115 (23%), Positives = 30/115 (26%), Gaps = 1/115 (0%)
Frame = +2
Query: 413 RXPPGXXXNALGPFRPFPXPWXQXPQXPGXGXRXNPXXXREGAXPQTPGEXXXXPXXN-P 589
+ PP +A P P P P A P P P P
Sbjct: 1020 KAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAP 1079
Query: 590 XGPPXCXKPSXPXXXPGLNPIXXXPPXPKPKKTKXXXXRXPPPTPPQKXXPXSPP 754
G P PS P P PP PKP P K +PP
Sbjct: 1080 SGAPPVPAPSGIPPVP--KPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP 1132
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 0.74
Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = -3
Query: 841 KGGEXGDRXFPXXXRXGGKGGGGXXGGXXGGGXXXV-FLRGGGGXXPXGXG 692
+GG G R G G GG GG GGG RGG G G G
Sbjct: 8 RGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG 58
Score = 25.8 bits (54), Expect = 9.1
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Frame = -3
Query: 835 GEXGDRXFPXXXRXGGKGGGGXXGGXXGG--GXXXVFLRGGGG 713
G G R R G GG G GG GG G RGG G
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRG 48
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/56 (26%), Positives = 17/56 (30%)
Frame = +2
Query: 575 PXXNPXGPPXCXKPSXPXXXPGLNPIXXXPPXPKPKKTKXXXXRXPPPTPPQKXXP 742
P P P P P PG+ PP P P R P P + P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = +2
Query: 641 LNPIXXXPPXPKPKKTKXXXXRXPPPTPPQKXXPXSPP 754
L P+ P P + K PPTPP + S P
Sbjct: 152 LTPVPKKPSKPSKPRKKVPVSHPLPPTPPSREEHVSVP 189
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +1
Query: 637 RVKPXXPRPPXPXTXKNXXXXXKVPXPHPPSKXXPXXPPLXN 762
R P R P P + P P P + P PPL N
Sbjct: 367 RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGN 408
Score = 27.1 bits (57), Expect = 3.9
Identities = 26/107 (24%), Positives = 31/107 (28%), Gaps = 1/107 (0%)
Frame = +1
Query: 643 KPXXPRPPXPXTXKNXXXXXK-VPXPHPPSKXXPXXPPLXNXXXXXXXXXXXXGXXAGKX 819
KP P P + K P P PPS+ PP+ N +
Sbjct: 289 KPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAA 348
Query: 820 GHPXXPLFGKXGGPFXVXPPPXRGXXVPXKPXXXPPXPGXGXXXXPP 960
G P G+ P PPP R P PP PP
Sbjct: 349 GSIPLPPQGRSAPP----PPPPRS--APSTGRQPPPLSSSRAVSNPP 389
Score = 25.8 bits (54), Expect = 9.1
Identities = 22/79 (27%), Positives = 25/79 (31%), Gaps = 7/79 (8%)
Frame = +2
Query: 539 AXPQTPGEXXXXPXXNPXGPPXCXKPSXPXXX-PGLNPIXXXPPXPKPKKT------KXX 697
A P P P PP +P P P +N PP P P
Sbjct: 252 APPPIPPPSNGTVSSPPNSPP---RPIAPVSMNPAINSTSK-PPLPPPSSRVSAAALAAN 307
Query: 698 XXRXPPPTPPQKXXPXSPP 754
R PPP PP + PP
Sbjct: 308 KKRPPPPPPPSRRNRGKPP 326
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 6.9
Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = -3
Query: 841 KGGEXGDRXFPXXXRXGGKGGG--GXXGGXXGGGXXXVFLRGG 719
+GG G R GG GGG G GG GG F RGG
Sbjct: 144 RGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGF-RGG 185
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/33 (33%), Positives = 12/33 (36%)
Frame = +2
Query: 614 PSXPXXXPGLNPIXXXPPXPKPKKTKXXXXRXP 712
P P PG P PP P P K + P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/55 (25%), Positives = 15/55 (27%)
Frame = +2
Query: 587 PXGPPXCXKPSXPXXXPGLNPIXXXPPXPKPKKTKXXXXRXPPPTPPQKXXPXSP 751
P GPP S P + P P P PPQ P P
Sbjct: 59 PSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPPQGGYPQQP 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.145 0.496
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,936,338
Number of Sequences: 5004
Number of extensions: 23127
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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