Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_B18
(858 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 34 0.022
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 31 0.16
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 29 0.64
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 28 1.5
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 28 1.5
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 28 2.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 3.4
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 7.9
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 34.3 bits (75), Expect = 0.022
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +1
Query: 331 LQRRINVLENDNMRLKLDATRNNENIAFH---DDDKLDLLQKIAELNKQKSQLMHHVFMV 501
LQ+R+ LE +N + K D+T N+ + ++D L+K E NKQ L +
Sbjct: 625 LQKRLQTLEEENNKAKEDSTSKTSNLLEQLKMTEAEVDSLRKENEENKQVIALKESELVK 684
Query: 502 SCENRNLWNK 531
S +N+ L N+
Sbjct: 685 SNDNKLLLNE 694
Score = 29.1 bits (62), Expect = 0.84
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Frame = +1
Query: 328 LLQRRINVLENDNMRLKLDATRNNENIAFHDDDKLDLLQKIAELNKQKSQLMHHVFMVSC 507
+ + ++ L +N K + +D+KL L ++I LN Q SQL + V+
Sbjct: 656 MTEAEVDSLRKENEENKQVIALKESELVKSNDNKLLLNEQIESLNDQLSQLKTEMESVTT 715
Query: 508 ENRNLWNKISTIXNCNKPNKE--NVKXH*FVPIPTSKAHLK 624
+L + +S + + + N K F I +S + LK
Sbjct: 716 SKESLADYLSNLKERHNDELDSLNKKLREFEGILSSNSSLK 756
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 31.5 bits (68), Expect = 0.16
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 319 RCLLLQRRINVLENDNMRLKLDATRNNENIAFHDDDKLDLLQKIAELNKQKSQLMHHV 492
RC L R I++L+N +LK+ N +I D L QK+ +L K + L++ +
Sbjct: 443 RCDQLNREIDILQNHVEKLKMSLKNTNSDITGED----VLQQKLKQLAKDRGNLLNEL 496
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 29.5 bits (63), Expect = 0.64
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 379 LDATRNNENIAFHDDDKLDLLQKIAEL-NKQKSQLMHHVFMVSCENRNLWNKISTIXN 549
L++ N N + + +D L K E+ + +K + H+ + E NLWNK+ N
Sbjct: 225 LESHTNRPNDVYVTQELIDQLCKQKEVFSAEKEKRSDHLKSIQSEVSNLWNKLQVSPN 282
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 406 IAFHDDDKLDLLQKIAELNKQKSQLM 483
I+FHD +LDL++ IA + K + +L+
Sbjct: 281 ISFHDTSRLDLVRNIASIPKSRWKLV 306
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 28.3 bits (60), Expect = 1.5
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Frame = +1
Query: 304 HAMRDRCLLLQRRINVLE-NDNMRLK----LDATRNNENIAFHDDDKLDLLQKIAELNKQ 468
H +RD C ++ +L D RL+ LDA +NNE D++ + L+ EL +
Sbjct: 39 HDIRDNCNIVNIIYRLLRATDEERLEKESLLDAIKNNEYEKQRDNNTIKRLKNELELYQN 98
Query: 469 KSQL-MHHVFMVSCENRNLWNKISTIXNCNKPNKENVK 579
+ QL ++ V + + L + + + N N+ +K
Sbjct: 99 ECQLQLNKVRTLERDQAELITQNKGLKDVNAKNELTLK 136
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 575 TFSLLGLLQFXIVDILFHRFLFSHD 501
TF ++GL + +V+ HRFLF D
Sbjct: 187 TFFIIGLFTWTLVEYTMHRFLFHLD 211
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +1
Query: 334 QRRINVLENDNMRLKLDAT--RNNENIAFHDDDKLDLLQKIAELNKQKSQL 480
+ +++ L+ N +L LD R++ N+A D+D+ +L ++AEL+K L
Sbjct: 849 ESKVSELKEVNGKLSLDLKNLRSSLNVAISDNDQ--ILTQLAELSKNYDSL 897
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 433 DLLQKIAELNKQKSQLMHHVFMVSCENRNL 522
D+LQ + E NKQ S +H F + E RN+
Sbjct: 1988 DILQLLKE-NKQMSSQLHECFQLLLEIRNV 2016
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,879
Number of Sequences: 5004
Number of extensions: 53312
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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