Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_B18
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282...    31   1.2  
06_01_0769 - 5745324-5746970                                           29   4.7  
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34...    29   6.3  
01_04_0010 - 15058175-15058195,15058320-15058430,15059031-150592...    28   8.3  
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967...    28   8.3  
01_03_0282 - 14580875-14580891,14582126-14585855                       28   8.3  

>11_06_0656 +
           25926192-25926289,25927530-25927659,25928248-25928294,
           25929274-25929388,25929504-25929753,25930079-25930239,
           25930372-25930567,25930672-25930836,25930918-25931070,
           25931160-25931248,25931385-25931423,25931460-25931681,
           25933503-25934165
          Length = 775

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 418 DDDKLDLLQKIAELNKQKSQLMHHVFMVSCENRNLWNKISTI 543
           DD + ++LQ+I  +N+   Q    + +V  EN+ L  K+S++
Sbjct: 33  DDKQTEMLQEILRMNRMMQQQNERIKLVLRENQELREKVSSL 74


>06_01_0769 - 5745324-5746970
          Length = 548

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -3

Query: 367 CCHSPKHLFCVVVIDNDPSWHEEPTREHCGD 275
           C HSP  L C    D DP+ H  P   HC D
Sbjct: 510 CLHSPPPLVCRARRDRDPAAH-LPFLRHCED 539


>03_01_0038 -
           340564-341108,341214-341463,341546-341649,341728-343255,
           343995-344056,344578-344728
          Length = 879

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +3

Query: 573 CEXPLVRTNTYIQSTPKTSVIIRKVF*IKLGRNISEXINSYIQEKSNLVDQYEQ-MAQLI 749
           CE   +   TY ++ P  S ++ K+    +G N+ + IN +I+   +L +Q+ + + QL+
Sbjct: 781 CEAITIIQETYFRNPPCLSFLMHKIQPPPMGENLIQEINKHIER--HLHNQFPRTLNQLV 838

Query: 750 GMXI 761
            + +
Sbjct: 839 NIDL 842


>01_04_0010 -
           15058175-15058195,15058320-15058430,15059031-15059246,
           15059327-15059505,15059655-15059820,15059914-15059972,
           15060065-15060107,15060285-15060354,15060458-15060547,
           15060621-15060742,15060777-15060808,15060876-15061064,
           15061148-15061241,15061325-15061412,15061498-15061718,
           15061924-15061997,15062081-15062363,15062455-15062589,
           15062721-15062942,15063029-15063208,15063305-15063402,
           15063522-15063634,15064156-15064259,15064400-15064522,
           15064857-15065192
          Length = 1122

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 337 RRINVLENDNMRLKLDATRNNENIAFHDDDKLDLLQKIAELNKQKSQLMHHVF 495
           +R+N L    +R  + A +  + I   D+D+L+ L   AE  ++K QL+   F
Sbjct: 844 QRLNELYEKEVRYLMQANQKKDTIDGEDEDQLEPL--TAEEQEEKEQLLEEGF 894


>01_03_0284 -
           14595643-14595663,14595978-14596018,14596379-14596732,
           14597023-14597494,14597524-14600001
          Length = 1121

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 277 HHSVHELALHAMRDRCLLLQRRINV--LENDNMRLKLDATRNN 399
           H  +H++ALH MR+ C+ +    N   L++ +  L L   R N
Sbjct: 499 HDLMHDIALHVMREECITVTGTPNSTRLKDSSRHLFLSYDRTN 541


>01_03_0282 - 14580875-14580891,14582126-14585855
          Length = 1248

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 193 F*EIMDTSSIVSFNNDSTFQATLKGDYNHHSVHELALHAMRDRCLLLQRRINVLE 357
           F ++ +TS    +  D   Q   K    H  +H++AL+ MR+ C+ +  R N ++
Sbjct: 472 FQDVDETSLFKMYRRDKLCQFR-KTCKIHDLMHDIALYVMREECVTVMGRPNSIQ 525


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,265,450
Number of Sequences: 37544
Number of extensions: 276162
Number of successful extensions: 611
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)