Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_B16
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.7  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.6  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 20/72 (27%), Positives = 23/72 (31%)
 Frame = +3

Query: 699 PPGAFQGXXXVPPXEXXPXXPPLSRXXARXXXXPXARLFPPSGGGXGXXSXXPPXXGRVF 878
           PP A      VPP       PPLS+          +   PP+G      S  P    R  
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNR-G 242

Query: 879 PPXPGXWGPXPP 914
           P  P    P  P
Sbjct: 243 PSIPSASVPPVP 254


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
 Frame = +2

Query: 632  P*APXPXXGXPKVGPPXRXXGXPPRGFSRXPXXSPXGXXPXXXP---LVPXPXP 784
            P  P P  G P V PP      P       P   P    P   P   L P P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/49 (28%), Positives = 16/49 (32%)
 Frame = +2

Query: 632  P*APXPXXGXPKVGPPXRXXGXPPRGFSRXPXXSPXGXXPXXXPLVPXP 778
            P  P P    P V  P      P    +  P  +P G  P   P V  P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP 1169


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 646 PPXRPSQSWAPPXXGGXPPP-GLFKDXXXFPPG 741
           PP + SQ +A P     PPP G  +    +PPG
Sbjct: 108 PPYQTSQFYARPQSSYAPPPSGRPRISYPYPPG 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,796,978
Number of Sequences: 5004
Number of extensions: 19543
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)