Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_B16
(915 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 33 0.24
05_01_0142 - 940421-940701,941262-941574 31 0.97
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 30 2.2
05_01_0141 - 937428-937717,938483-938705 30 2.9
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 30 2.9
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.9
02_04_0400 - 22608519-22608844,22609044-22609122 29 3.9
03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132... 29 6.8
05_06_0282 + 26915249-26915881 28 9.0
03_02_0553 - 9420960-9421164,9421634-9421812,9421902-9421970,942... 28 9.0
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 33.5 bits (73), Expect = 0.24
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +1
Query: 637 GPXPPXRPSQSWAPPXXGGXPPPGLFKDXXXFPPGXXPP 753
GP PP +P+ PP G PPP L PPG PP
Sbjct: 29 GPPPPQQPAYGHMPPPQGA-PPPFLAPPPPP-PPGPPPP 65
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 31.5 bits (68), Expect = 0.97
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +1
Query: 640 PXPPXRPSQSWAPPXXGGXPPPGLFKDXXXFPPGXXP 750
P PP P GG PPPG + +PP P
Sbjct: 62 PPPPGAYPPQHGYPQPGGYPPPGGYPQHGGYPPAGYP 98
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 637 GPXPPXRPSQSWAPPXXGGXPPPGLFKDXXXFP-PGXXPP 753
G PP P ++ PP PPPG + +P PG PP
Sbjct: 45 GAYPP--PPGAYPPPPGAYPPPPGAYPPQHGYPQPGGYPP 82
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +1
Query: 646 PPXR--PSQSWAPPXXGGXPPPGLFKDXXXFPPGXXPP 753
PP + P Q + PP PPPG + PPG PP
Sbjct: 30 PPHQGYPPQGYPPPPGAYPPPPGAYPP----PPGAYPP 63
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 640 PXPPXRPSQSWAPPXXGGXPPPGLFKDXXXFPPG 741
P PP + Q PP GG P PG PPG
Sbjct: 86 PPPPPQQVQVQVPPQYGGVPNPGYPMAQQMQPPG 119
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 822 SGGGXGXXSXXPPXXGRVFPPXPGXWGPXPP 914
+GGG G PP G +PP P + P PP
Sbjct: 22 AGGGGGHGYPYPPQQG-YYPPPPTAYPPPPP 51
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/74 (28%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Frame = +3
Query: 699 PPG--AFQGXXXVPPXEXXPXXPPLSRXXARXXXXPXARLFPPSGGGXGXXSXXPPXXGR 872
PP A G P P PP S P +PP G + PP G+
Sbjct: 405 PPADPAAGGYTSQPYMGAPPPPPPGSYAPVPWGQPPPYASYPPPPPGSSMYNPPPPAPGQ 464
Query: 873 VFPPXPGXWGPXPP 914
PP G PP
Sbjct: 465 ATPPPYGVQYAPPP 478
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +1
Query: 640 PXPPXRPSQSWAPPXXGGXPPPGLFKDXXXFPP--GXXPP 753
P PP P + PP G PPP K PP G PP
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPP 365
>02_04_0400 - 22608519-22608844,22609044-22609122
Length = 134
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 825 GGGXGXXSXXPPXXGRVFPPXPG 893
GGG G PP G +PP PG
Sbjct: 85 GGGGGGGGYYPPWNGGYYPPGPG 107
>03_01_0164 -
1326002-1326409,1326410-1326428,1326523-1326647,
1327482-1327530,1328834-1328855,1328969-1329071
Length = 241
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 646 PPXRPSQSWAPPXXGGXPPPGLFKDXXXFPP 738
PP Q A P G PPPG + +PP
Sbjct: 204 PPAGYPQGGAYPPPGSYPPPGSYPPQGSYPP 234
>05_06_0282 + 26915249-26915881
Length = 210
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/75 (24%), Positives = 25/75 (33%)
Frame = -1
Query: 735 GEXXGILEKPRGGXPXXRXGGPTLGXPXXGXGAXGKXPTTRPFXXXXXXAGPLAKRXSXG 556
G G+L +P G P G +G G + +TRP G ++
Sbjct: 76 GGGGGVLRRPPGRGPPPPGPGGHVGPLSGGVSSSAGRSSTRPLMISDDDGGVSGRQWPAP 135
Query: 555 *PPXPGETXXPPXXG 511
PP T P G
Sbjct: 136 PPPPDPNTPVQPLSG 150
>03_02_0553 -
9420960-9421164,9421634-9421812,9421902-9421970,
9422452-9422607,9422756-9422968
Length = 273
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -1
Query: 705 RGGXPXXRXGGPTLGXPXXGXGAXGKXPTTRPFXXXXXXAGP 580
RG GG G G G G PT RPF AGP
Sbjct: 25 RGRRGSAAGGGGGGGGGVGGGGGGGVGPTRRPFKRSGNRAGP 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,784,433
Number of Sequences: 37544
Number of extensions: 303900
Number of successful extensions: 1005
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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