Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_B16
(915 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 33 0.28
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 33 0.28
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 32 0.50
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.50
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.50
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 32 0.50
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 32 0.66
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 31 0.87
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 31 1.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.0
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 30 2.7
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 29 3.5
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 33.1 bits (72), Expect = 0.28
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = +2
Query: 638 APXPXXGXPKVGPPXRXXGXPPRGFSRXPXXSPXGXXPXXXPLVPXPXP 784
AP P G PP G PP R P +P G PL+P P
Sbjct: 770 APAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRVP 818
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 33.1 bits (72), Expect = 0.28
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = +2
Query: 638 APXPXXGXPKVGPPXRXXGXPPRGFSRXPXXSPXGXXPXXXPLVPXPXP 784
AP P G PP G PP R P +P G PL+P P
Sbjct: 770 APAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRVP 818
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 32.3 bits (70), Expect = 0.50
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +2
Query: 638 APXPXXGXPKVGPPXRXXGXPPRGFSRXPXXSPXGXXPXXXPLVP-XPXP 784
AP P G PP G PP R P +P G PL+P P P
Sbjct: 770 APAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGP 819
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.50
Identities = 25/90 (27%), Positives = 28/90 (31%), Gaps = 2/90 (2%)
Frame = +1
Query: 442 GXLPXPPPXPXXPRXXGXGXXFLXXXXXXXXF--PRXRGLPXGXPFGQRXXXXXXXXXXX 615
G P PPP P G + F P G+P P G R
Sbjct: 294 GMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPP 353
Query: 616 XXWXFXXGPXPPXRPSQSWAPPXXGGXPPP 705
G PP PS+ APP G PP
Sbjct: 354 RYPSAGPGMYPPPPPSRPPAPPSGHGMIPP 383
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +1
Query: 646 PPXRPSQSWAPPXXGGXPPPGLFKDXXXFPPGXXPP 753
PP P + PP GG PPP +P G PP
Sbjct: 317 PPPPPPSRFGPPGMGGMPPPP--PPGMRYPGGMPPP 350
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.50
Identities = 25/90 (27%), Positives = 28/90 (31%), Gaps = 2/90 (2%)
Frame = +1
Query: 442 GXLPXPPPXPXXPRXXGXGXXFLXXXXXXXXF--PRXRGLPXGXPFGQRXXXXXXXXXXX 615
G P PPP P G + F P G+P P G R
Sbjct: 304 GMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPP 363
Query: 616 XXWXFXXGPXPPXRPSQSWAPPXXGGXPPP 705
G PP PS+ APP G PP
Sbjct: 364 RYPSAGPGMYPPPPPSRPPAPPSGHGMIPP 393
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +1
Query: 646 PPXRPSQSWAPPXXGGXPPPGLFKDXXXFPPGXXPP 753
PP P + PP GG PPP +P G PP
Sbjct: 327 PPPPPPSRFGPPGMGGMPPPP--PPGMRYPGGMPPP 360
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 32.3 bits (70), Expect = 0.50
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +2
Query: 638 APXPXXGXPKVGPPXRXXGXPPRGFSRXPXXSPXGXXPXXXPLVP-XPXP 784
AP P G PP G PP R P +P G PL+P P P
Sbjct: 770 APAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGP 819
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 31.9 bits (69), Expect = 0.66
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = +1
Query: 637 GPXPPXRPSQSWAPPXXGGXPPPGLFKDXXXFPPGXXPP 753
GP PP S PP G PPP L PPG PP
Sbjct: 1572 GPPPPRGGSHCQGPPPLMGGPPPRLGMP----PPGPPPP 1606
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 31.5 bits (68), Expect = 0.87
Identities = 28/102 (27%), Positives = 29/102 (28%)
Frame = +1
Query: 448 LPXPPPXPXXPRXXGXGXXFLXXXXXXXXFPRXRGLPXGXPFGQRXXXXXXXXXXXXXWX 627
+P P P P G F PR GLP G P
Sbjct: 659 IPPPNIQPPVPHPPPMGFPFQHQLTQLPGQPRPAGLPPGVP----------------PMF 702
Query: 628 FXXGPXPPXRPSQSWAPPXXGGXPPPGLFKDXXXFPPGXXPP 753
P PP P APP G PPP F P PP
Sbjct: 703 NLNAPPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPP 744
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -2
Query: 641 GPXXKXQPPGXXTGPGPXXXLWPKGXPXGNPRXRG 537
GP PG +GPGP P G P GNP G
Sbjct: 181 GPPGPDGAPGGGSGPGPAGPAGPPG-PDGNPGSAG 214
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -2
Query: 641 GPXXKXQPPGXXTGPGPXXXLWPKGXPXGNPRXRG 537
GP PG +GPGP P G P GNP G
Sbjct: 181 GPPGPDGAPGGGSGPGPAGPAGPPG-PDGNPGSAG 214
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.5
Identities = 26/90 (28%), Positives = 27/90 (30%), Gaps = 2/90 (2%)
Frame = +1
Query: 442 GXLPXPPPXPXXPRXXGXGXXFLXXXXXXXXFPRXRGLPXGXPFGQRXXXXXXXXXXXXX 621
G P PPP P G G PR G P P G
Sbjct: 235 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRT-GSPPPPPTGSPPPPPAGGSPPPPR 293
Query: 622 WXFXXGPXPPXR--PSQSWAPPXXGGXPPP 705
P PP P+ S PP GG PPP
Sbjct: 294 AGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 323
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +1
Query: 646 PPXRPSQSWAPPXXGGXPPPGLFKDXXXFPPGXXPP 753
PP P+ S PP GG PPP PP PP
Sbjct: 272 PPPPPTGSPPPPPAGGSPPP----PRAGSPPPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.5
Identities = 26/90 (28%), Positives = 27/90 (30%), Gaps = 2/90 (2%)
Frame = +1
Query: 442 GXLPXPPPXPXXPRXXGXGXXFLXXXXXXXXFPRXRGLPXGXPFGQRXXXXXXXXXXXXX 621
G P PPP P G G PR G P P G
Sbjct: 256 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRT-GSPPPPPTGSPPPPPAGGSPPPPR 314
Query: 622 WXFXXGPXPPXR--PSQSWAPPXXGGXPPP 705
P PP P+ S PP GG PPP
Sbjct: 315 AGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 344
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +1
Query: 646 PPXRPSQSWAPPXXGGXPPPGLFKDXXXFPPGXXPP 753
PP P+ S PP GG PPP PP PP
Sbjct: 293 PPPPPTGSPPPPPAGGSPPP----PRAGSPPPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.5
Identities = 26/90 (28%), Positives = 27/90 (30%), Gaps = 2/90 (2%)
Frame = +1
Query: 442 GXLPXPPPXPXXPRXXGXGXXFLXXXXXXXXFPRXRGLPXGXPFGQRXXXXXXXXXXXXX 621
G P PPP P G G PR G P P G
Sbjct: 241 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRT-GSPPPPPTGSPPPPPAGGSPPPPR 299
Query: 622 WXFXXGPXPPXR--PSQSWAPPXXGGXPPP 705
P PP P+ S PP GG PPP
Sbjct: 300 AGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 329
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +1
Query: 646 PPXRPSQSWAPPXXGGXPPPGLFKDXXXFPPGXXPP 753
PP P+ S PP GG PPP PP PP
Sbjct: 278 PPPPPTGSPPPPPAGGSPPP----PRAGSPPPPPPP 309
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +1
Query: 637 GPXPPXRPSQSWAPPXXGGXPPPGLFKDXXXFPPGXXPP 753
GP PP P PP GG PPP PP PP
Sbjct: 741 GPPPP--PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = +1
Query: 637 GPXPPXRPSQSWAPPXXGGXPPPGLFKDXXXFPPGXXPP 753
GP PP P PP GG PPP PPG PP
Sbjct: 725 GPPPP--PPPGGLPPITGGPPPPP--------PPGGLPP 753
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/62 (32%), Positives = 21/62 (33%)
Frame = +3
Query: 729 VPPXEXXPXXPPLSRXXARXXXXPXARLFPPSGGGXGXXSXXPPXXGRVFPPXPGXWGPX 908
+PP P PP P PP GG S PP PP PG P
Sbjct: 719 LPPITGGPPPPPPPGGLPPITGGPPP---PPPPGGLPPISGGPPPP----PPPPGGCPPP 771
Query: 909 PP 914
PP
Sbjct: 772 PP 773
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +1
Query: 637 GPXPPXRPSQSWAPPXXGGXPPPGLFKDXXXFPPGXXPP 753
GP PP P PP GG PPP PP PP
Sbjct: 741 GPPPP--PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = +1
Query: 637 GPXPPXRPSQSWAPPXXGGXPPPGLFKDXXXFPPGXXPP 753
GP PP P PP GG PPP PPG PP
Sbjct: 725 GPPPP--PPPGGLPPITGGPPPPP--------PPGGLPP 753
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/62 (32%), Positives = 21/62 (33%)
Frame = +3
Query: 729 VPPXEXXPXXPPLSRXXARXXXXPXARLFPPSGGGXGXXSXXPPXXGRVFPPXPGXWGPX 908
+PP P PP P PP GG S PP PP PG P
Sbjct: 719 LPPITGGPPPPPPPGGLPPITGGPPP---PPPPGGLPPISGGPPPP----PPPPGGCPPP 771
Query: 909 PP 914
PP
Sbjct: 772 PP 773
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +1
Query: 637 GPXPPXRPSQSWAPPXXGGXPPPGLFKDXXXFPPGXXPP 753
GP PP P PP GG PPP PP PP
Sbjct: 324 GPPPP--PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = +1
Query: 637 GPXPPXRPSQSWAPPXXGGXPPPGLFKDXXXFPPGXXPP 753
GP PP P PP GG PPP PPG PP
Sbjct: 308 GPPPP--PPPGGLPPITGGPPPPP--------PPGGLPP 336
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/62 (32%), Positives = 21/62 (33%)
Frame = +3
Query: 729 VPPXEXXPXXPPLSRXXARXXXXPXARLFPPSGGGXGXXSXXPPXXGRVFPPXPGXWGPX 908
+PP P PP P PP GG S PP PP PG P
Sbjct: 302 LPPITGGPPPPPPPGGLPPITGGPPP---PPPPGGLPPISGGPPPP----PPPPGGCPPP 354
Query: 909 PP 914
PP
Sbjct: 355 PP 356
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/73 (30%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Frame = +3
Query: 702 PGAF-QGXXXVPPXEXXPXXPPLSRXXARXXXXPXARLFPPSGGGXGXXSXXPP-XXGRV 875
PG++ G +P P P P A FPP GG G PP G
Sbjct: 249 PGSYPSGPADIPQGPGMPRAFPPGASAPVAPGMPGA--FPPGQGGPGMPGSFPPGAPGPG 306
Query: 876 FPPXPGXWGPXPP 914
P PG + P P
Sbjct: 307 GPGMPGSFAPGAP 319
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +3
Query: 804 ARLFPPSGGGXGXXSXX--PPXXGRVFPPXPGXWGPXPP 914
A LFP +GGG G PP PP P G PP
Sbjct: 16 AFLFPSAGGGGGGCGCGAPPPPPACAPPPAPACGGGAPP 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,694,238
Number of Sequences: 27780
Number of extensions: 223752
Number of successful extensions: 923
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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