Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_B13
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   2.5  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.2  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    26   5.7  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    26   7.5  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   9.9  

>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 458 SSHNILYSKHENGCPASSLIDKMKYKLGIK-VTYNFYVTNRLEKNYV*FVYESKL 619
           SSH+   S++E+  PASS +        +    Y+++V +  E+    F+ ESK+
Sbjct: 10  SSHSAKASQYESSAPASSSLGNSHPNESLDYYIYDYFVKHNFEEAAQAFLRESKI 64


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 86  PLRPEFLFCLFVYFIVI*GYKLLSYKVM--RVKINKMK 193
           PL P F  CL + F+++   ++LS+  M  +  +N +K
Sbjct: 17  PLIPSFHVCLLIMFLILYSQEILSFFFMCSKFSMNSLK 54



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +3

Query: 339 IKPSLNKNHAVILVLFDSLKKTEGLLLYDLCSCNNDRAFKVVIIFCIRNM 488
           I+P +   H  +L++F  L   E L  + +CS  +  + K  ++F  + +
Sbjct: 15  IRPLIPSFHVCLLIMFLILYSQEILSFFFMCSKFSMNSLKFCVLFSFKTV 64


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 234 MKMGI-RDTYIYCHFVRLVVYDLIRFKKPYRTYSAI 338
           M+ G+  DTY+ CH+V  ++ +    +K  ++ +AI
Sbjct: 309 MRAGLLTDTYLECHYVSQIIKNYTNIEKTPQSEAAI 344


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 524 MKYKLGIKVTYNFYVTNRLEKNYV*FVYESKLIFT 628
           M YK  +   Y F V  +L +N++ F+Y    +FT
Sbjct: 308 MSYKAKLSTKYVFRVLAQLSENFI-FIYLGMSLFT 341


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 278 HKMTVNVRVADSHFHFLRNNHINTIYFIPSFC*FL 174
           HK+++     D++F F + +   +IY I   C FL
Sbjct: 2   HKISLQFFFVDNYFFFWKQSKYQSIYAIQIRCFFL 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,031
Number of Sequences: 5004
Number of extensions: 58344
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)