Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_B13
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61947-2|AAB03135.1|  498|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective sperm...    28   9.4  
AF016424-5|AAB65326.1|  282|Caenorhabditis elegans Hypothetical ...    28   9.4  

>U61947-2|AAB03135.1|  498|Caenorhabditis elegans Hypothetical
           protein C06G3.6 protein.
          Length = 498

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -2

Query: 756 DYHWRMVCENIKKSXYSQLNIKCSILYEL 670
           +YHWR+  E+I K+   +L+ +C +L +L
Sbjct: 17  NYHWRVYNEDINKNAVLELSCQCQVLDQL 45


>U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective
           spermatogenesis protein39, isoform a protein.
          Length = 522

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +3

Query: 324 TYSAIIKPSLNKNHAVILVLFDSLKKTEGLLLYDLCSCNNDRAFKVVIIFCIRNMKMDV 500
           T  A IK  L + H V L  + SL+    LL   + + +N+  FK+V IF  R +K ++
Sbjct: 169 TIEASIKRML-QGHTVTLDYYRSLRDKTQLLKQAVATYDNNTIFKIV-IFLERTLKENI 225


>AF016424-5|AAB65326.1|  282|Caenorhabditis elegans Hypothetical
           protein F39G3.4 protein.
          Length = 282

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 107 FCLFVYFIVI*GYKLLSYKVMRVKINKMKV 196
           F +F+ FI + G  LLSY+V R   N++ +
Sbjct: 101 FLMFLGFIYLQGEALLSYRVYRFTTNRVSI 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,126,057
Number of Sequences: 27780
Number of extensions: 311312
Number of successful extensions: 679
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)