Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_B10
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.85 
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     26   6.0  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    26   7.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = -2

Query: 215  VTSVARPVQRPSDVAGRRSAVASGPTRPQPHVGAGRVASPGXTGTSPAALP 63
            V S A PV +PS  A    A +  P  P+P V A  V +P  +G  P   P
Sbjct: 1135 VPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPS-SGIPPVPKP 1184



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -2

Query: 209  SVARPVQRPSDVAGRRSAVASGPTRPQPHVGAGRVASPGXTGTSPAALPRV 57
            S A PV +PS  A      +  P  P+P V A  V +P  +G  P   P V
Sbjct: 1118 SGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP--SGAPPVPKPSV 1166


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 93  TRRCNATSPNMWLGSRGPGCDGXAASSDVARP 188
           TR+  ATSP+M+ G+ G        SS   RP
Sbjct: 255 TRQSTATSPSMFAGNSGNQIGLARVSSSFGRP 286


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = -2

Query: 242 LSGRESSRRVTSVARPVQRPSDVAGRRSAVASGPT-RPQPHVGAGRVASPGXTGTSPAAL 66
           LS R SS  V++    V   S    +R+ + +    R   HV   R    G     P+AL
Sbjct: 6   LSRRTSSSTVSTDGEGVYSRSTKERKRNFIVNSRLKRGGGHVRVNRSGRLGSVTMRPSAL 65

Query: 65  PRVPKSYRNSSIV 27
            R      NSS+V
Sbjct: 66  TRAHSQNPNSSLV 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,106
Number of Sequences: 5004
Number of extensions: 46624
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)