Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_B10
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-11|AAK29900.1|   78|Caenorhabditis elegans Hypothetical...    33   0.26 
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF025460-2|AAF02169.3|  545|Caenorhabditis elegans Prion-like-(q...    30   1.8  
AF164625-1|AAD47816.1|  944|Caenorhabditis elegans tandem-array-...    29   5.6  
AF078788-9|AAC26963.1|  132|Caenorhabditis elegans Hypothetical ...    29   5.6  
AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array ...    29   5.6  

>AC025721-11|AAK29900.1|   78|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.12 protein.
          Length = 78

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 22/53 (41%), Positives = 22/53 (41%)
 Frame = +1

Query: 55  GTRGSAAGLVPVXPGDATRPAPTCGWGRVGPDATAERRPATSLGLWTGRATDV 213
           G  G   G  P  P  A  PAP CG G   P A A   PA S G   G A  V
Sbjct: 25  GGGGCGCGAPPPPPACAPPPAPACGGGAPPPPAYA--APAPSYGAPAGGAYPV 75


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +1

Query: 58  TRGSAAGLVPVXPGDATRPAP--TCGWGRVGPDATAER--RPATSLGLWTG 198
           T G   G  P  PG A  P P  T  +G  GP  T E+   P+ +   +TG
Sbjct: 151 TPGQTTGAYPYYPGPAGPPVPVSTGSYGLYGPTVTTEKPMEPSVNPETYTG 201


>AF025460-2|AAF02169.3|  545|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 41
           protein.
          Length = 545

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -2

Query: 185 PSDVAGRRSAVASGPTRPQPHVGAGRVASPGXTGTSPAALPRVPKSYRNSS 33
           P+D+    S+ A+  + P P  GAG  A+     +S  + P     ++ SS
Sbjct: 21  PTDIQSTSSSSAAPASAPAPRAGAGAGATSSSAASSSTSTPSSSSHHKKSS 71


>AF164625-1|AAD47816.1|  944|Caenorhabditis elegans
           tandem-array-modifier protein protein.
          Length = 944

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 142 PRDPSHMLGLVALHRRVXLAQ-VPLRCXECXNLTGIP 35
           P DP+ + G+V L RR   A+   ++C EC   T +P
Sbjct: 104 PNDPNMVRGIVVLPRRGPEARATEIKCPECRKPTLVP 140


>AF078788-9|AAC26963.1|  132|Caenorhabditis elegans Hypothetical
           protein ZC190.10 protein.
          Length = 132

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +3

Query: 51  FXHSXQRSGTCASXTRRCNATSPNMWLGSRGPGCDGXAASSDVARPLDWPRY*RDSPRRL 230
           F  S  R+G  ++ ++RC     + WL  +          +DV   LD P   R++ R  
Sbjct: 56  FIISENRNGNASNNSKRCRNLQKSSWLQCQQKENLELNKEADVMPCLDAPAQFRETVRLT 115

Query: 231 ATRQ 242
           AT Q
Sbjct: 116 ATEQ 119


>AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array
           expression modifierprotein 1 protein.
          Length = 944

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 142 PRDPSHMLGLVALHRRVXLAQ-VPLRCXECXNLTGIP 35
           P DP+ + G+V L RR   A+   ++C EC   T +P
Sbjct: 104 PNDPNMVRGIVVLPRRGPEARATEIKCPECRKPTLVP 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,925,109
Number of Sequences: 27780
Number of extensions: 280560
Number of successful extensions: 886
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)