Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_B10
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    27   0.29 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.3  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   8.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 96  RRCNATSPNMWLGSRGPGCDGXAASSDVA 182
           +RCNAT    W+GS G    G  +  + A
Sbjct: 362 KRCNATGAFSWIGSDGWSARGLVSDGNEA 390


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 16/60 (26%), Positives = 23/60 (38%)
 Frame = -2

Query: 200 RPVQRPSDVAGRRSAVASGPTRPQPHVGAGRVASPGXTGTSPAALPRVPKSYRNSSIVXI 21
           +P   P   +   S  A  P   Q    A  V +   TGT P  LP+     R + +V +
Sbjct: 440 QPPLSPQSDSSSSSRSAESPMSVQVDPMAASVVAAALTGTYPTLLPQWCLPPREAPLVGV 499



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -2

Query: 161 SAVASGPTRPQPHVGAGRVASPGXTGTSPAALPRVPKSYRN 39
           SA  +GP  P   V      +   TGT+     R+ K  +N
Sbjct: 232 SATGTGPATPSAVVATSNATAAMTTGTTTIPTRRLRKRRQN 272


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 42  PVRFXHSXQRSGTCASXTRRCNATSP 119
           PV+   S   S TC+  T RC    P
Sbjct: 279 PVKQHRSSSASTTCSGHTVRCFTGGP 304


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 118 PTCGWGRVGPDA 153
           P  GWG  GP+A
Sbjct: 33  PLFGWGSYGPEA 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,405
Number of Sequences: 438
Number of extensions: 3504
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)