Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_B09
(1246 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 37 0.007
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 34 0.047
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 0.64
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.3
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 28 3.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 7.2
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 7.2
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 7.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 36.7 bits (81), Expect = 0.007
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +3
Query: 837 PPPPPPPPXXXXXXXXXXPPPPP 905
PPPPPPPP PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 837 PPPPPPPPXXXXXXXXXXPPPP 902
PPPPPPPP P P
Sbjct: 776 PPPPPPPPAVSAGGSRYYAPAP 797
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 837 PPPPPPPPXXXXXXXXXXPPPPP 905
PPPPPP P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPP 754
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.9 bits (74), Expect = 0.047
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 837 PPPPPPPPXXXXXXXXXXPPPP 902
PPPPPPPP PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 33.9 bits (74), Expect = 0.047
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 840 PPPPPPPXXXXXXXXXXPPPPP 905
PPPPPPP PPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.5 bits (63), Expect = 1.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 837 PPPPPPPPXXXXXXXXXXPPPPP 905
P PPPPP PPPPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPP 28
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 837 PPPPPPPPXXXXXXXXXXPPPPP 905
PP PPPP PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect(2) = 0.64
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 786 PPXXXXXXXXXXXXFXXPPPPPPPP 860
PP + PPPPPPPP
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPPP 197
Score = 20.6 bits (41), Expect(2) = 0.64
Identities = 8/21 (38%), Positives = 8/21 (38%)
Frame = +3
Query: 843 PPPPPPXXXXXXXXXXPPPPP 905
PP P PPPPP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPP 244
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Frame = +3
Query: 783 PPPXXXXXXXXXXXXFXXPPPPPP--------PPXXXXXXXXXXPPPPP 905
PPP PPPPPP PP PPPPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 5/27 (18%)
Frame = +3
Query: 840 PPPPPPPXXXXXXXXXXPP-----PPP 905
PPPPPPP PP PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPP 363
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 837 PPPPPPPPXXXXXXXXXXPPP 899
PPPPPPPP P P
Sbjct: 307 PPPPPPPPSNDFWKDSNEPAP 327
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 837 PPPPPPPPXXXXXXXXXXPPPP 902
PPPPPPPP P P
Sbjct: 306 PPPPPPPPPSNDFWKDSNEPAP 327
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 837 PPPPPPPP 860
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 837 PPPPPPPP 860
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 837 PPPPPPPP 860
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 837 PPPPPPPP 860
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,015
Number of Sequences: 5004
Number of extensions: 20469
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 677341880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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