Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_B08
(913 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 79 9e-16
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 29 0.69
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 29 0.92
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 2.8
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.7
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 27 4.9
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 27 4.9
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 8.5
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 79.0 bits (186), Expect = 9e-16
Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 10/142 (7%)
Frame = +2
Query: 239 WADEVEIDQGVLPPPSEVVEN--GLKIVTEYKYDNDNKKVKIVRTYK---IEKRVVSKSI 403
WAD+ + G+ P + +N G K + E++ D++ KKVK+ R + I +RV ++
Sbjct: 9 WADDEDYGTGL--PSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRVIRKTVITERV-QHAV 65
Query: 404 AKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQ----FITSKEESQRPDDGELDGLK-PP 568
A+RK W KFG A G + TT+V E+V ++ + T+KEE Q D+ L K
Sbjct: 66 AERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQ--DEAALAAAKVKA 123
Query: 569 SSXVIFKCRTCQGDHXTLYCPF 634
+ +CR C+G+H T CP+
Sbjct: 124 KGSSVVRCRACKGNHFTAQCPY 145
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 29.5 bits (63), Expect = 0.69
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 275 PPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAK 409
PP ++VV+ K D++ + +V TY I K V+ +IAK
Sbjct: 337 PPQADVVQACADKAISIKKSTDSRLLVVVSTYSIGKEKVAVAIAK 381
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 29.1 bits (62), Expect = 0.92
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Frame = +2
Query: 281 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSAS----- 445
P E +E + +++++ + + + + T + +R S AK+K +KF D S
Sbjct: 294 PDENIELSTRTLSQWRKNYVERMIALEATKYVRRRGASS--AKKKELNKFFDWESFHPLL 351
Query: 446 ----DKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPP 568
+K P+ T + +DV TS+ E R GEL GL P
Sbjct: 352 KPWIEKLKPSNNTPSEIDDVLRNIDTSEVEVGRDVQGEL-GLNIP 395
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 27.5 bits (58), Expect = 2.8
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = +2
Query: 248 EVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSI-AKRKTWS 424
EVE+D+ V + V LKIV E KY + + R +E + SI R +
Sbjct: 106 EVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVELNALQTSIDTIRNELN 165
Query: 425 KFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDG 544
+ D +D + + D F++ + +E ++ DG
Sbjct: 166 ELRDQLND------SESKKLSDKFVEIRSELDEVRKQQDG 199
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 139 VGLIGMLHFVLLDTNKRDNRNVVTST 62
VG GMLH LL+TN + TST
Sbjct: 660 VGPGGMLHVDLLETNAKQESEATTST 685
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 26.6 bits (56), Expect = 4.9
Identities = 20/81 (24%), Positives = 30/81 (37%)
Frame = +2
Query: 341 NKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKE 520
NK + + IEK V K AKRK + + G K P E+ + +
Sbjct: 172 NKSAQKLNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELSDEETNEDDLLGQS 231
Query: 521 ESQRPDDGELDGLKPPSSXVI 583
+ D +D P +S I
Sbjct: 232 PTACTTDANIDNSIPENSDKI 252
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 248 EVEIDQGVLPPPSEVVENGLKIVTEYKY 331
EVE++ V+ P S EN + V +Y Y
Sbjct: 114 EVEVNSEVVKPDSATTENENRYVNQYNY 141
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.8 bits (54), Expect = 8.5
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 281 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGP 460
PS + K + KY+N + + I R V+ S R+ + F D +D+P
Sbjct: 50 PSPTLAGMAKRTLKLKYENMDAALSINR------EVLCYSKDAREIYYNFEDEVADEPAE 103
Query: 461 NPATTN 478
PA+T+
Sbjct: 104 APASTS 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,112
Number of Sequences: 5004
Number of extensions: 53687
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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