Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_B07
         (1155 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.40 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.93 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 17/49 (34%), Positives = 17/49 (34%)
 Frame = +1

Query: 289 PPPPXGXKXXPPXXPXKKKXKXPXGXXXGGXPPXXLSXGGGGXRXPPPP 435
           PPPP      P   P       P     GG PP     G  G   PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPV-PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 29.9 bits (64), Expect = 0.70
 Identities = 17/56 (30%), Positives = 17/56 (30%)
 Frame = +1

Query: 289 PPPPXGXKXXPPXXPXKKKXKXPXGXXXGGXPPXXLSXGGGGXRXPPPPXXXKEGG 456
           PPPP      P   P       P        PP     G G    PPPP     GG
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -2

Query: 344 FFFXGXXGGXFFXPXGGGGXPXXXXPPPPXPRXFXGFXG-GGE 219
           F   G  GG F    GG G P      PP P  F GF G GGE
Sbjct: 180 FHHRGHNGGGFGGFGGGSGGP------PPGPGGFGGFGGFGGE 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,477
Number of Sequences: 5004
Number of extensions: 25377
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 617576420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)