Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_B07
(1155 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.041
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.041
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.041
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 36 0.041
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 36 0.054
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 36 0.054
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 36 0.054
AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (... 35 0.13
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 34 0.17
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 34 0.17
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 34 0.17
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 33 0.50
AL132876-8|CAD21660.1| 829|Caenorhabditis elegans Hypothetical ... 32 0.88
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 31 1.2
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 31 1.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.2
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 31 1.5
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 31 1.5
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 31 1.5
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 2.0
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 30 3.6
AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical ... 30 3.6
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z69903-1|CAA93772.1| 137|Caenorhabditis elegans Hypothetical pr... 29 4.7
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein. 29 4.7
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 4.7
Z49130-7|CAA88972.2| 316|Caenorhabditis elegans Hypothetical pr... 29 6.2
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 29 6.2
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 8.2
AF067219-2|AAC17035.1| 74|Caenorhabditis elegans Hypothetical ... 29 8.2
AC006636-3|AAF39799.1| 139|Caenorhabditis elegans Ground-like (... 29 8.2
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 25 9.4
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 25 9.4
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 36.3 bits (80), Expect = 0.041
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Frame = +1
Query: 283 GXPPPPXGXKXXPPXXPXKKKXKXPXGXXX--GGXPPXXLSXGGGGXRXPPPPXXXKEGG 456
G PPPP PP P G GG PP GG PPPP +GG
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Score = 32.7 bits (71), Expect = 0.50
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +1
Query: 283 GXPPPPXGXKXXPPXXPXKKKXKXPXGXXXGGXPPXXLSXGGGGXRXPPPP 435
G PPPP PP P G PP GG PPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 31.9 bits (69), Expect = 0.88
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Frame = +1
Query: 283 GXPPPPXGXKXX---PPXXPXKKKXKXPXGXXXGGXPPXXLSXGGGGXRXPPPP 435
G PPPP G PP P G PP L GG PPPP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
Score = 31.9 bits (69), Expect = 0.88
Identities = 24/60 (40%), Positives = 24/60 (40%)
Frame = -2
Query: 392 IXGGXPPXXFPXGXFXFFFXGXXGGXFFXPXGGGGXPXXXXPPPPXPRXFXGFXGGGEPP 213
I GG PP P G GG P GG P PPPP P GF GG PP
Sbjct: 738 ITGGPPPPPPPGG-----LPPISGGPPPPPPPPGGCPPP--PPPPPP---GGFKGGPPPP 787
Score = 29.1 bits (62), Expect = 6.2
Identities = 22/60 (36%), Positives = 22/60 (36%)
Frame = -2
Query: 392 IXGGXPPXXFPXGXFXFFFXGXXGGXFFXPXGGGGXPXXXXPPPPXPRXFXGFXGGGEPP 213
I GG PP P G GG P GG P PPPP P GG PP
Sbjct: 709 ITGGPPP---PPG-----LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 36.3 bits (80), Expect = 0.041
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Frame = +1
Query: 283 GXPPPPXGXKXXPPXXPXKKKXKXPXGXXX--GGXPPXXLSXGGGGXRXPPPPXXXKEGG 456
G PPPP PP P G GG PP GG PPPP +GG
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Score = 32.7 bits (71), Expect = 0.50
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +1
Query: 283 GXPPPPXGXKXXPPXXPXKKKXKXPXGXXXGGXPPXXLSXGGGGXRXPPPP 435
G PPPP PP P G PP GG PPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 31.9 bits (69), Expect = 0.88
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Frame = +1
Query: 283 GXPPPPXGXKXX---PPXXPXKKKXKXPXGXXXGGXPPXXLSXGGGGXRXPPPP 435
G PPPP G PP P G PP L GG PPPP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
Score = 31.9 bits (69), Expect = 0.88
Identities = 24/60 (40%), Positives = 24/60 (40%)
Frame = -2
Query: 392 IXGGXPPXXFPXGXFXFFFXGXXGGXFFXPXGGGGXPXXXXPPPPXPRXFXGFXGGGEPP 213
I GG PP P G GG P GG P PPPP P GF GG PP
Sbjct: 738 ITGGPPPPPPPGG-----LPPISGGPPPPPPPPGGCPPP--PPPPPP---GGFKGGPPPP 787
Score = 29.1 bits (62), Expect = 6.2
Identities = 22/60 (36%), Positives = 22/60 (36%)
Frame = -2
Query: 392 IXGGXPPXXFPXGXFXFFFXGXXGGXFFXPXGGGGXPXXXXPPPPXPRXFXGFXGGGEPP 213
I GG PP P G GG P GG P PPPP P GG PP
Sbjct: 709 ITGGPPP---PPG-----LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 36.3 bits (80), Expect = 0.041
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Frame = +1
Query: 283 GXPPPPXGXKXXPPXXPXKKKXKXPXGXXX--GGXPPXXLSXGGGGXRXPPPPXXXKEGG 456
G PPPP PP P G GG PP GG PPPP +GG
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
Score = 32.7 bits (71), Expect = 0.50
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +1
Query: 283 GXPPPPXGXKXXPPXXPXKKKXKXPXGXXXGGXPPXXLSXGGGGXRXPPPP 435
G PPPP PP P G PP GG PPPP
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
Score = 31.9 bits (69), Expect = 0.88
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Frame = +1
Query: 283 GXPPPPXGXKXX---PPXXPXKKKXKXPXGXXXGGXPPXXLSXGGGGXRXPPPP 435
G PPPP G PP P G PP L GG PPPP
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 347
Score = 31.9 bits (69), Expect = 0.88
Identities = 24/60 (40%), Positives = 24/60 (40%)
Frame = -2
Query: 392 IXGGXPPXXFPXGXFXFFFXGXXGGXFFXPXGGGGXPXXXXPPPPXPRXFXGFXGGGEPP 213
I GG PP P G GG P GG P PPPP P GF GG PP
Sbjct: 321 ITGGPPPPPPPGG-----LPPISGGPPPPPPPPGGCPPP--PPPPPP---GGFKGGPPPP 370
Score = 29.1 bits (62), Expect = 6.2
Identities = 22/60 (36%), Positives = 22/60 (36%)
Frame = -2
Query: 392 IXGGXPPXXFPXGXFXFFFXGXXGGXFFXPXGGGGXPXXXXPPPPXPRXFXGFXGGGEPP 213
I GG PP P G GG P GG P PPPP P GG PP
Sbjct: 292 ITGGPPP---PPG-----LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 343
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 36.3 bits (80), Expect = 0.041
Identities = 20/58 (34%), Positives = 21/58 (36%)
Frame = +1
Query: 283 GXPPPPXGXKXXPPXXPXKKKXKXPXGXXXGGXPPXXLSXGGGGXRXPPPPXXXKEGG 456
G PPPP G P P G PP G GG PPPP + GG
Sbjct: 754 GAPPPPFGRGAGP----MSSFPPPPRGGMHHMPPPPSFRGGRGGHGGPPPPHFDRRGG 807
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 35.9 bits (79), Expect = 0.054
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Frame = +1
Query: 289 PPPPXGXKXXPPXXPXKKKXKXPXGXXXGGXPPXXLSXGG---GGXRXPPPPXXXKEGG 456
PPPP PP P + P G PP G GG PPPP GG
Sbjct: 288 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGG 346
Score = 32.7 bits (71), Expect = 0.50
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Frame = +1
Query: 283 GXPPPPXGXKXXPPXXPXKKKXKXPXGXXXGG---XPPXXLSXGGGGXRXPPPP 435
G PPPP + PP P GG PP G G PPPP
Sbjct: 315 GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 368
Score = 29.1 bits (62), Expect = 6.2
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = +1
Query: 283 GXPPPPXGXKXXPPXXPXKKKXKXPXGXXXGGXPPXXLSXGGGGXRXPPPPXXXKEG 453
G P P G PP P + P G PP GG PPPP G
Sbjct: 305 GRTPGPPGMPGMPPPPPPSR--FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 359
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 35.9 bits (79), Expect = 0.054
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Frame = +1
Query: 289 PPPPXGXKXXPPXXPXKKKXKXPXGXXXGGXPPXXLSXGG---GGXRXPPPPXXXKEGG 456
PPPP PP P + P G PP G GG PPPP GG
Sbjct: 298 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGG 356
Score = 32.7 bits (71), Expect = 0.50
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Frame = +1
Query: 283 GXPPPPXGXKXXPPXXPXKKKXKXPXGXXXGG---XPPXXLSXGGGGXRXPPPP 435
G PPPP + PP P GG PP G G PPPP
Sbjct: 325 GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 378
Score = 29.1 bits (62), Expect = 6.2
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = +1
Query: 283 GXPPPPXGXKXXPPXXPXKKKXKXPXGXXXGGXPPXXLSXGGGGXRXPPPPXXXKEG 453
G P P G PP P + P G PP GG PPPP G
Sbjct: 315 GRTPGPPGMPGMPPPPPPSR--FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 369
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 35.9 bits (79), Expect = 0.054
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = -3
Query: 667 GGGEXEXMQPCXGGCXLXVXGG---GGGVXXXTPPPPPP 560
GGG C GGC GG GGG PPPPPP
Sbjct: 33 GGGGCGGGGGCGGGCGYGGGGGCGYGGGYGCGIPPPPPP 71
>AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (grd
related) protein19 protein.
Length = 157
Score = 34.7 bits (76), Expect = 0.13
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 628 GCXLXVXGGGGGVXXXTPPPPPP 560
GC GGGGG PPPPPP
Sbjct: 28 GCGCGCGGGGGGGGCCAPPPPPP 50
Score = 30.3 bits (65), Expect = 2.7
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 561 GGGGGGVXXXTPPPPP 608
GGGGGG PPPPP
Sbjct: 34 GGGGGGGGCCAPPPPP 49
Score = 29.9 bits (64), Expect = 3.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 561 GGGGGGVXXXTPPPPP 608
GGGGGG PPPPP
Sbjct: 35 GGGGGGGCCAPPPPPP 50
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 34.3 bits (75), Expect = 0.17
Identities = 23/58 (39%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Frame = -3
Query: 718 PPAPXXGXGXXLGAXXRGGGEXEXMQPCXGG---CXLXVXG--GGGGVXXXTPPPPPP 560
PPA G G G GGG C GG C G GGGG PPPPP
Sbjct: 58 PPACGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPP 115
Score = 32.3 bits (70), Expect = 0.67
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -2
Query: 332 GXXGGXFFXPXGGGGXPXXXXPPPPXPRXFXGFXGGG 222
G GG GGGG PPPP P G GGG
Sbjct: 90 GGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGG 126
Score = 31.1 bits (67), Expect = 1.5
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -3
Query: 637 CXGGCXLXVX-GGGGGVXXXTPPPPPP 560
C GGC GGGGG PPPPP
Sbjct: 32 CGGGCGGGGGCGGGGGCGGGCAPPPPP 58
Score = 30.7 bits (66), Expect = 2.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -2
Query: 299 GGGGXPXXXXPPPPXPRXFXGFXGGG 222
GGGG PPPP P G GGG
Sbjct: 44 GGGGCGGGCAPPPPPPACGGGCGGGG 69
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 34.3 bits (75), Expect = 0.17
Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -3
Query: 718 PPAPXX-GXGXXLGAXXRGGGEXEXMQPCXGGCXLXVXGGGGG 593
PPAP G G G GGG PC GGC GGGGG
Sbjct: 51 PPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGC----GGGGGG 89
Score = 32.7 bits (71), Expect = 0.50
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = -3
Query: 682 GAXXRGGGEXEXMQPCXGGCXLXVXGGGGGVXXXTPPPPP 563
G GGG PC GGC GG GG PPP P
Sbjct: 40 GGCGGGGGCAPPPAPCGGGCG-GGGGGCGGGGGCAPPPAP 78
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 34.3 bits (75), Expect = 0.17
Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -3
Query: 718 PPAPXX-GXGXXLGAXXRGGGEXEXMQPCXGGCXLXVXGGGGG 593
PPAP G G G GGG PC GGC GGGGG
Sbjct: 51 PPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGC----GGGGGG 89
Score = 32.7 bits (71), Expect = 0.50
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = -3
Query: 682 GAXXRGGGEXEXMQPCXGGCXLXVXGGGGGVXXXTPPPPP 563
G GGG PC GGC GG GG PPP P
Sbjct: 40 GGCGGGGGCAPPPAPCGGGCG-GGGGGCGGGGGCAPPPAP 78
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 32.7 bits (71), Expect = 0.50
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +3
Query: 561 GGGGGGVXXXTPPPPPXTXRXQPPXQGC 644
GGGGGG PPPPP PP C
Sbjct: 23 GGGGGGCGCGAPPPPPAC--APPPAPAC 48
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 260 GGGGAXXGGXPPPPXGXKXPP 322
GGGG G PPPP PP
Sbjct: 24 GGGGGCGCGAPPPPPACAPPP 44
Score = 28.7 bits (61), Expect = 8.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 607 GGGGGVXXXTPPPPP 563
GGGGG PPPPP
Sbjct: 24 GGGGGCGCGAPPPPP 38
Score = 28.7 bits (61), Expect = 8.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 260 GGGGAXXGGXPPPPXGXKXPPP 325
GGGG G PPPP P P
Sbjct: 25 GGGGCGCGAPPPPPACAPPPAP 46
>AL132876-8|CAD21660.1| 829|Caenorhabditis elegans Hypothetical
protein Y105E8A.9 protein.
Length = 829
Score = 31.9 bits (69), Expect = 0.88
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = -3
Query: 712 APXXGXGXXLGAXXRGGGEXEXMQPCXGGCXLXVXGGGGGVXXXTPPPPPP 560
AP G LG GGG L V G G PPPPPP
Sbjct: 630 APVVTNGDLLGDLNLGGGGSTNPSNDYSSDLLGVGVGSGAASAQAPPPPPP 680
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 31.5 bits (68), Expect = 1.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 561 GGGGGGVXXXTPPPPPXTXRXQPP 632
GGGGG PP PP R +PP
Sbjct: 634 GGGGGPTGPPAPPKPPAKPRGRPP 657
Score = 28.7 bits (61), Expect = 8.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 324 GGGXFXPXGGGGXPPXXAPPPPXXP 250
GG P GGGG P P PP P
Sbjct: 625 GGPPRGPGGGGGGGPTGPPAPPKPP 649
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 31.5 bits (68), Expect = 1.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 561 GGGGGGVXXXTPPPPPXTXRXQPP 632
GGGGG PP PP R +PP
Sbjct: 634 GGGGGPTGPPAPPKPPAKPRGRPP 657
Score = 28.7 bits (61), Expect = 8.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 324 GGGXFXPXGGGGXPPXXAPPPPXXP 250
GG P GGGG P P PP P
Sbjct: 625 GGPPRGPGGGGGGGPTGPPAPPKPP 649
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 1.2
Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Frame = +1
Query: 289 PPPPXGXKXXPPXXPXKKKXKXPXGXXXGGXPPXXLSXGG---GGXRXPPPPXXXK 447
PPPP G PP P G G P + G G PPPP K
Sbjct: 281 PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQK 336
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 1.2
Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Frame = +1
Query: 289 PPPPXGXKXXPPXXPXKKKXKXPXGXXXGGXPPXXLSXGG---GGXRXPPPPXXXK 447
PPPP G PP P G G P + G G PPPP K
Sbjct: 302 PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQK 357
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 1.2
Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Frame = +1
Query: 289 PPPPXGXKXXPPXXPXKKKXKXPXGXXXGGXPPXXLSXGG---GGXRXPPPPXXXK 447
PPPP G PP P G G P + G G PPPP K
Sbjct: 287 PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQK 342
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical
protein F53F1.5 protein.
Length = 215
Score = 31.1 bits (67), Expect = 1.5
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 607 GGGGGVXXXTPPPPPP 560
GGGGG PPPPPP
Sbjct: 22 GGGGGCGCAPPPPPPP 37
Score = 29.9 bits (64), Expect = 3.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 549 FFXXGGGGGGVXXXTPPPPP 608
F GGGGG PPPPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPPP 36
Score = 28.7 bits (61), Expect = 8.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 314 FFXPXGGGGXPXXXXPPPPXP 252
F P GGGG PPPP P
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPP 37
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 31.1 bits (67), Expect = 1.5
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 607 GGGGGVXXXTPPPPPP 560
GGGGG PPPPPP
Sbjct: 22 GGGGGCGCAPPPPPPP 37
Score = 29.9 bits (64), Expect = 3.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 549 FFXXGGGGGGVXXXTPPPPP 608
F GGGGG PPPPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPPP 36
Score = 29.5 bits (63), Expect = 4.7
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -2
Query: 314 FFXPXGGGGXPXXXXPPPPXPRXFXGFXGGGEPP 213
F P GGGG PPPP P G G PP
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPP---CGCGGPSLPP 47
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 31.1 bits (67), Expect = 1.5
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -3
Query: 631 GGCXLXVXGGGGGVXXXTPPPPPP 560
GG GGGGG PPPPPP
Sbjct: 23 GGGGGGYSGGGGGGGDAAPPPPPP 46
Score = 30.3 bits (65), Expect = 2.7
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 561 GGGGGGVXXXTPPPPPXTXRXQP 629
GGGGGG PPPPP P
Sbjct: 31 GGGGGGGDAAPPPPPPADAAPAP 53
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 324 GGGXFXPXGGGGXPPXXAPPPP 259
GGG + GGGG PPPP
Sbjct: 25 GGGGYSGGGGGGGDAAPPPPPP 46
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2
protein.
Length = 231
Score = 31.1 bits (67), Expect = 1.5
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 607 GGGGGVXXXTPPPPPP 560
GGGGG PPPPPP
Sbjct: 22 GGGGGCGCAPPPPPPP 37
Score = 29.9 bits (64), Expect = 3.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 549 FFXXGGGGGGVXXXTPPPPP 608
F GGGGG PPPPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPPP 36
Score = 28.7 bits (61), Expect = 8.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 314 FFXPXGGGGXPXXXXPPPPXP 252
F P GGGG PPPP P
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPP 37
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 31.1 bits (67), Expect = 1.5
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -2
Query: 314 FFXPXGGGGXPXXXXPPPPXPRXFXGFXGGG 222
F P GGGG PPPP P G GGG
Sbjct: 17 FLFPSGGGGG-CGCAPPPPPPACGCGGGGGG 46
Score = 29.9 bits (64), Expect = 3.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 549 FFXXGGGGGGVXXXTPPPPP 608
F GGGGG PPPPP
Sbjct: 17 FLFPSGGGGGCGCAPPPPPP 36
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = +1
Query: 283 GXPPPPXGXKXXPPXXPXKKKXKXPXGXXXGGXPPXXLSXGGGGXRXPPPP 435
G PPP G PP P P GG PP G PPPP
Sbjct: 72 GFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMF--GAPPPPPPP 120
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 29.9 bits (64), Expect = 3.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 549 FFXXGGGGGGVXXXTPPPPP 608
F GGGGG PPPPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPPP 36
>AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical
protein C02E7.6 protein.
Length = 70
Score = 29.9 bits (64), Expect = 3.6
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -2
Query: 314 FFXPXGGGGXPXXXXPPPPXPRXFXGFXGGGEPP 213
F P GGGG PPPP G GG PP
Sbjct: 17 FLFPSGGGGGCGCAPPPPPA----CGCGGGAAPP 46
>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical protein
F29D10.4 protein.
Length = 1100
Score = 29.5 bits (63), Expect = 4.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 260 GGGGAXXGGXPPPPXGXKXPPP 325
G G + G PPP G K PPP
Sbjct: 1019 GNGNSPAGRGPPPARGPKPPPP 1040
>Z69903-1|CAA93772.1| 137|Caenorhabditis elegans Hypothetical
protein F46F2.3 protein.
Length = 137
Score = 29.5 bits (63), Expect = 4.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 604 GGGGVXXXTPPPPPP 560
GGGG PPPPPP
Sbjct: 108 GGGGAYAQAPPPPPP 122
Score = 28.7 bits (61), Expect = 8.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 567 GGGGVXXXTPPPPPXTXRXQPPXQG 641
GGGG PPPPP + P G
Sbjct: 108 GGGGAYAQAPPPPPPSSYASGPAAG 132
>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
Length = 1036
Score = 29.5 bits (63), Expect = 4.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 260 GGGGAXXGGXPPPPXGXKXPPP 325
G G + G PPP G K PPP
Sbjct: 955 GNGNSPAGRGPPPARGPKPPPP 976
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.5 bits (63), Expect = 4.7
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = -1
Query: 381 GPPPXXSXGXFXFFFXXXXGGGXFXPXGGGGXPPXXAPPPPXXP 250
GPPP G + G G F P GG P PPP P
Sbjct: 410 GPPPPGGPGAPGSYGPPQGGPGGFGPPPPGG-PGAYGPPPTGFP 452
>Z49130-7|CAA88972.2| 316|Caenorhabditis elegans Hypothetical
protein T06D8.9 protein.
Length = 316
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 561 GGGGGGVXXXTPPPPPXTXRXQPPXQG 641
GGGGGG PPP +PP G
Sbjct: 195 GGGGGGPGGYPSAPPPYDDYSKPPPYG 221
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 637 CXGGCXLXVXGGGGGVXXXTPPPPP 563
C + GGGGG PPPPP
Sbjct: 12 CSNAFLFNLLGGGGGGCCAPPPPPP 36
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.7 bits (61), Expect = 8.2
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -1
Query: 384 GGPPPXXSXGXFXFFFXXXXGGGXFXPXGGGGXPPXXAPPPPXXP 250
G PP G F GG P G G PP PP P P
Sbjct: 159 GAPPSGGPPGLFDPS-GAPPSGGPPGPFGPSGAPPSGGPPGPFNP 202
>AF067219-2|AAC17035.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.14 protein.
Length = 74
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -3
Query: 667 GGGEXEXMQPCXGGCXLXVXGGGGGVXXXTPPPPP 563
GGG P GC G G PPPPP
Sbjct: 24 GGGAGGCCPPAQPGCGNPCQGAGPQYAAAPPPPPP 58
>AC006636-3|AAF39799.1| 139|Caenorhabditis elegans Ground-like (grd
related) protein27 protein.
Length = 139
Score = 28.7 bits (61), Expect = 8.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 607 GGGGGVXXXTPPPPP 563
GGGGG PPPPP
Sbjct: 25 GGGGGCGCGAPPPPP 39
Score = 28.7 bits (61), Expect = 8.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 564 GGGGGVXXXTPPPPP 608
GGGGG PPPPP
Sbjct: 25 GGGGGCGCGAPPPPP 39
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 24.6 bits (51), Expect(2) = 9.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 580 TPPPPPPXXKK 548
TPPPPPP +K
Sbjct: 172 TPPPPPPAQQK 182
Score = 22.2 bits (45), Expect(2) = 9.4
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -3
Query: 595 GVXXXTPPPPPP 560
G PPPPPP
Sbjct: 149 GATSSAPPPPPP 160
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 24.6 bits (51), Expect(2) = 9.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 580 TPPPPPPXXKK 548
TPPPPPP +K
Sbjct: 172 TPPPPPPAQQK 182
Score = 22.2 bits (45), Expect(2) = 9.4
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -3
Query: 595 GVXXXTPPPPPP 560
G PPPPPP
Sbjct: 149 GATSSAPPPPPP 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,125,931
Number of Sequences: 27780
Number of extensions: 341914
Number of successful extensions: 3597
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2823
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3140771858
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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